CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86317	Canola	plastid	97.48	88.27
CDY05690	Canola	mitochondrion, plastid	91.37	84.67
CDY48744	Canola	mitochondrion, plastid	87.77	80.26
CDY00069	Canola	plastid	87.77	79.22
CDY19961	Canola	plastid	87.05	79.08
AT5G48270.1	Thale cress	plastid	89.21	77.02
CDY27882	Canola	nucleus	58.63	56.01
CDY00849	Canola	nucleus	58.63	56.01
KRH16994	Soybean	cytosol	55.76	50.82
KRH72631	Soybean	cytosol	55.4	50.16
PGSC0003DMT400069001	Potato	plastid	55.4	50.0
Solyc12g044670.1.1	Tomato	plastid	55.4	50.0
VIT_12s0057g01390.t01	Wine grape	mitochondrion	55.76	49.68
PGSC0003DMT400006698	Potato	mitochondrion	51.44	46.43
KRG90008	Soybean	plastid	52.16	46.03
GSMUA_AchrUn_...	Banana	cytosol	46.04	45.88
Solyc03g121220.2.1	Tomato	cytosol, mitochondrion, nucleus, plastid	51.44	44.97
Zm00001d015796_P001	Maize	cytosol	30.22	43.75
GSMUA_Achr3P12010_001	Banana	cytosol	41.37	41.67
Zm00001d053654_P001	Maize	plastid	42.09	39.53
OQU84582	Sorghum	cytosol	43.88	38.01
TraesCS6B01G189500.1	Wheat	cytosol	40.65	36.22
TraesCS6D01G150500.1	Wheat	nucleus	40.65	36.1
TraesCS6A01G161700.1	Wheat	cytosol	40.29	35.78
HORVU6Hr1G032720.1	Barley	cytosol	39.93	35.24
CDY66553	Canola	cytosol	34.89	34.4
CDX82547	Canola	cytosol	34.89	33.33
CDY50761	Canola	cytosol, peroxisome, plastid	33.81	32.75
CDY21108	Canola	plastid	33.09	32.62
CDY72112	Canola	cytosol, peroxisome, plastid	32.73	32.27
CDY30020	Canola	cytosol, plastid	32.37	31.91
CDY00013	Canola	cytosol, plastid	33.09	31.19
CDY52485	Canola	plastid	32.73	31.06
CDX86191	Canola	plastid	32.73	31.06
Os02t0198800-01	Rice	cytosol, nucleus	40.65	30.38
CDX85733	Canola	cytosol, nucleus, plastid	27.7	22.45
CDY51100	Canola	cytosol	26.98	22.06
CDX77134	Canola	cytosol, plastid	25.18	21.67
CDX69793	Canola	nucleus	28.42	21.01
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	33.45	20.95
CDX97072	Canola	nucleus	28.78	20.67
CDY30531	Canola	plastid	24.1	20.43
CDX79683	Canola	cytosol	21.94	19.24
CDX84556	Canola	cytosol	21.94	19.0
CDX76763	Canola	plastid	23.38	18.62
CDY56275	Canola	cytosol	9.35	16.99
CDY33155	Canola	cytosol	19.06	13.25

Protein Annotations

EnsemblPlants:CDX85324	EnsemblPlantsGene:GSBRNA2T00142990001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF2	PFAM:PF05910
ProteinID:CDX85324	ProteinID:CDX85324.1	SEG:seg	UniParc:UPI0004EED7F1	MapMan:35.2	:

Description

BnaC07g26350D

Coordinates

chrLK031841:-:1215137..1216108

Molecular Weight (calculated)

31238.2 Da

IEP (calculated)

8.076

GRAVY (calculated)

-0.251

Length

278 amino acids

Sequence
(BLAST)

001: MLSFRIPSMG TQPAAFAAKI TDTTKTVAQL KSAATPTPHS TNLMNHSLTV MVSSLDNDMN YCCKIDLVKP WQFWSKRGSK SFDVEGNFVE VFWDLRSAKL
101: SGNGSPEPVS DYYVAIVSDE EVVLLLGDLK HKAYKRTKSR PALVEGFIYF KKESIFGKKT FSTRARFDEQ RKGHELVVES SNDEKDQEMW ISVDGIVLVH
201: VKNLQWKFRG NVMVLVDRTP VMVYYDVHDW LFGSSESTAS SGLFFGGGSS PLSRYNSASS GYGQLHEFCL FLYAGKLE

Best Arabidopsis Sequence Match ( AT5G48270.1 )
(BLAST)

001: MLSFRMPSIG SQPTAFAAKI TDNPKTVAQL KSAASPSPHS TVTCGYQAHV AGFFRNVTVL WSKNLMNHSL TVMVSSLDND MNYCCKIDLV KPWQFWSKRG
101: SKSFDVEGNF VEVFWDLRSA KLAGNGSPEP VSDYYVAVVS DEEVVLLLGD LKQKAYKRTK SRPALVEGFI YFKKESIFGK KTFSTRARFD EQRKEHEVVV
201: ESSNGAAEPE MWISVDGIVV VNVKNLQWKF RGNQMVMVDR TPVMVYYDVH DWLFASSETA ASSGLFLFKP VPVGAMVDES FSDAEEGDSG GGSSPLSRYN
301: SASSGFGPLH DFCLFLYAWK LE

Arabidopsis Description

DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9LUA7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.