Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50761 | Canola | cytosol, peroxisome, plastid | 93.97 | 92.33 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 92.55 | 91.26 |
| AT3G04860.1 | Thale cress | plastid | 84.4 | 82.35 |
| CDY21108 | Canola | plastid | 76.95 | 76.95 |
| CDY30020 | Canola | cytosol, plastid | 75.18 | 75.18 |
| CDX86191 | Canola | plastid | 76.95 | 74.06 |
| CDY52485 | Canola | plastid | 76.6 | 73.72 |
| CDY00013 | Canola | cytosol, plastid | 74.82 | 71.53 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 63.12 | 62.46 |
| Solyc01g097790.2.1 | Tomato | cytosol | 62.77 | 59.2 |
| PGSC0003DMT400057872 | Potato | cytosol | 62.77 | 59.2 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 63.12 | 59.14 |
| KRG92651 | Soybean | cytosol | 62.77 | 59.0 |
| KRH68710 | Soybean | plastid | 61.35 | 58.25 |
| KRG96949 | Soybean | cytosol, plastid | 63.12 | 58.17 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 51.42 | 55.56 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 51.06 | 54.55 |
| Zm00001d013042_P001 | Maize | plastid | 55.67 | 53.95 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 55.32 | 53.61 |
| EER93250 | Sorghum | cytosol, plastid | 54.61 | 52.92 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 53.55 | 52.07 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 53.19 | 51.37 |
| Zm00001d034527_P001 | Maize | plastid | 53.19 | 51.02 |
| TraesCS5A01G456500.1 | Wheat | plastid | 52.48 | 50.68 |
| Os07t0572300-01 | Rice | plastid | 50.35 | 50.0 |
| HORVU2Hr1G038060.1 | Barley | plastid | 48.23 | 48.57 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 75.89 | 48.2 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 52.48 | 48.05 |
| TraesCS2D01G204300.1 | Wheat | plastid | 47.87 | 47.7 |
| TraesCS2B01G223900.1 | Wheat | plastid | 47.52 | 47.35 |
| TraesCS2A01G196200.1 | Wheat | plastid | 46.1 | 45.94 |
| Zm00001d021869_P001 | Maize | plastid | 44.68 | 44.37 |
| TraesCS5B01G465500.1 | Wheat | plastid | 52.48 | 44.05 |
| OQU90135 | Sorghum | plastid | 45.39 | 37.65 |
| CDY27882 | Canola | nucleus | 37.59 | 36.43 |
| CDY00849 | Canola | nucleus | 37.59 | 36.43 |
| CDY19961 | Canola | plastid | 35.82 | 33.01 |
| CDY48744 | Canola | mitochondrion, plastid | 35.46 | 32.89 |
| CDY00069 | Canola | plastid | 35.82 | 32.79 |
| CDX85324 | Canola | plastid | 32.27 | 32.73 |
| CDY05690 | Canola | mitochondrion, plastid | 34.75 | 32.67 |
| CDX77134 | Canola | cytosol, plastid | 37.23 | 32.51 |
| CDX86317 | Canola | plastid | 35.11 | 32.25 |
| CDY30531 | Canola | plastid | 35.82 | 30.79 |
| CDY66553 | Canola | cytosol | 28.01 | 28.01 |
| CDX82547 | Canola | cytosol | 28.01 | 27.15 |
| CDY51100 | Canola | cytosol | 32.62 | 27.06 |
| CDX79683 | Canola | cytosol | 30.14 | 26.81 |
| CDX85733 | Canola | cytosol, nucleus, plastid | 32.27 | 26.53 |
| CDX84556 | Canola | cytosol | 30.14 | 26.48 |
| CDX69793 | Canola | nucleus | 35.11 | 26.33 |
| CDX97072 | Canola | nucleus | 35.11 | 25.58 |
| CDY56275 | Canola | cytosol | 13.12 | 24.18 |
| CDX76763 | Canola | plastid | 28.72 | 23.21 |
| CDY33155 | Canola | cytosol | 28.72 | 20.25 |
Protein Annotations
| EnsemblPlants:CDY72112 | EnsemblPlantsGene:GSBRNA2T00024933001 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF40 | PFAM:PF05910 |
| ProteinID:CDY72112 | ProteinID:CDY72112.1 | UniParc:UPI0004EEE8FA | UniProt:A0A078K2I3 | MapMan:35.2 | : |
Description
BnaC05g52260DBnaC05g52260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K2I3]
Coordinates
chrLK049018:-:656..1504
Molecular Weight (calculated)
31298.9 Da
IEP (calculated)
9.567
GRAVY (calculated)
-0.130
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFPSCSGE NGVQTADSPS PNAGKTAQNL VICIYRCRIR GKTCLITVTW TKSLMGQCVT VGVDDSRLCK VEIKPWLFTK RKGSKNLCNI SVLWDLSSAK
101: FGSGPEPLGG FYVCVVADKE MTLLLGDMRR EAFKKTNAAP SSSLGAVIIA KREHVFGKRT FETKARFSND GKTHDLVIDC DVSVSDPCLV VRVDGKVSMK
201: VKRVHWKFRG NDTMVVDRVS VEVLWDVHSW FFGVPSSPGH AVFMFRTCQQ PVEKTWSLAQ VPTSSKSQSV GFSLVLYAWK NE
101: FGSGPEPLGG FYVCVVADKE MTLLLGDMRR EAFKKTNAAP SSSLGAVIIA KREHVFGKRT FETKARFSND GKTHDLVIDC DVSVSDPCLV VRVDGKVSMK
201: VKRVHWKFRG NDTMVVDRVS VEVLWDVHSW FFGVPSSPGH AVFMFRTCQQ PVEKTWSLAQ VPTSSKSQSV GFSLVLYAWK NE
001: MRDFPSCSGE NGVQIADSSS SSSAGRNAQN LVICIYRCRI RGRTCLITVT WTKNLMGQCV TVGVDDSCNR SLCKVEIKPW LFTKRKGSKT LEAYACNIDV
101: FWDLSSAKFG SSPEPLGGFY VGVVVDKEMV LLLGDMKKEA FKKTNAAPSS SLGAVFIAKK EHVFGKRTFA TKAQFSGDGK THDLVIECDT SLSDPCLIVR
201: VDGKILMQVQ RLHWKFRGND TIIVNRISVE VLWDVHSWFF GLPSSPGNAV FMFRTCQSVE KTWSFTQVPT SSKSQSFGFS LILYAWKNE
101: FWDLSSAKFG SSPEPLGGFY VGVVVDKEMV LLLGDMKKEA FKKTNAAPSS SLGAVFIAKK EHVFGKRTFA TKAQFSGDGK THDLVIECDT SLSDPCLIVR
201: VDGKILMQVQ RLHWKFRGND TIIVNRISVE VLWDVHSWFF GLPSSPGNAV FMFRTCQSVE KTWSFTQVPT SSKSQSFGFS LILYAWKNE
Arabidopsis Description
AT3g04860/T9J14_19 [Source:UniProtKB/TrEMBL;Acc:Q9CAV2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.