CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05690	Canola	mitochondrion, plastid	94.08	95.33
Bra020708.1-P	Field mustard	mitochondrion	98.68	93.17
CDX85324	Canola	plastid	80.26	87.77
CDX86317	Canola	plastid	88.49	87.62
CDY19961	Canola	plastid	88.16	87.58
CDY00069	Canola	plastid	85.2	84.09
AT5G48270.1	Thale cress	plastid	87.83	82.92
CDY27882	Canola	nucleus	58.22	60.82
CDY00849	Canola	nucleus	58.22	60.82
VIT_12s0057g01390.t01	Wine grape	mitochondrion	57.24	55.77
KRH16994	Soybean	cytosol	55.59	55.41
KRH72631	Soybean	cytosol	54.93	54.4
PGSC0003DMT400069001	Potato	plastid	54.93	54.22
Solyc12g044670.1.1	Tomato	plastid	54.93	54.22
PGSC0003DMT400006698	Potato	mitochondrion	51.97	51.3
Solyc03g121220.2.1	Tomato	cytosol, mitochondrion, nucleus, plastid	51.97	49.69
GSMUA_AchrUn_...	Banana	cytosol	45.39	49.46
KRG90008	Soybean	plastid	50.99	49.21
GSMUA_Achr3P12010_001	Banana	cytosol	42.11	46.38
Zm00001d015796_P001	Maize	cytosol	28.62	45.31
Zm00001d053654_P001	Maize	plastid	42.11	43.24
OQU84582	Sorghum	cytosol	43.09	40.81
CDY66553	Canola	cytosol	36.51	39.36
TraesCS6B01G189500.1	Wheat	cytosol	40.13	39.1
TraesCS6A01G161700.1	Wheat	cytosol	39.47	38.34
TraesCS6D01G150500.1	Wheat	nucleus	39.47	38.34
CDX82547	Canola	cytosol	36.51	38.14
HORVU6Hr1G032720.1	Barley	cytosol	39.47	38.1
CDY72112	Canola	cytosol, peroxisome, plastid	32.89	35.46
CDY21108	Canola	plastid	32.89	35.46
CDY50761	Canola	cytosol, peroxisome, plastid	33.22	35.19
CDY30020	Canola	cytosol, plastid	32.24	34.75
CDX86191	Canola	plastid	33.22	34.47
CDY52485	Canola	plastid	33.22	34.47
CDY00013	Canola	cytosol, plastid	33.22	34.24
Os02t0198800-01	Rice	cytosol, nucleus	39.47	32.26
CDX85733	Canola	cytosol, nucleus, plastid	27.3	24.2
CDX77134	Canola	cytosol, plastid	25.66	24.15
CDY51100	Canola	cytosol	26.64	23.82
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	33.55	22.97
CDX69793	Canola	nucleus	27.96	22.61
CDY30531	Canola	plastid	24.34	22.56
CDX79683	Canola	cytosol	23.03	22.08
CDX97072	Canola	nucleus	27.96	21.96
CDX84556	Canola	cytosol	23.03	21.81
CDX76763	Canola	plastid	23.36	20.34
CDY56275	Canola	cytosol	8.88	17.65
CDY33155	Canola	cytosol	21.05	16.0

Protein Annotations

EnsemblPlants:CDY48744	EnsemblPlantsGene:GSBRNA2T00091646001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF2	PFAM:PF05910
ProteinID:CDY48744	ProteinID:CDY48744.1	UniParc:UPI0004EE5834	UniProt:A0A078IH67	MapMan:35.2	:

Description

BnaA02g30050DBnaA02g30050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH67]

Coordinates

chrLK032789:-:52231..53199

Molecular Weight (calculated)

34402.2 Da

IEP (calculated)

8.790

GRAVY (calculated)

-0.180

Length

304 amino acids

Sequence
(BLAST)

001: MLSFRIPSIR TQPTAFAAKI TDTTKTVAQL KSAATPTPHS TVTCGYQAHV AGFFRNITVL WSKNLMNHSL TVMVSSLDND MNYCCKIDLV KPWQFWSKRG
101: SKSFDVEGKF VEVFWDLRAA KLSGNGSPEP MSDYYVAIVS DEEVVLLLGD LKHKAYKRTK SRPALVEGYI YFKKESIFGK KTFSTRARFD EQRKEHEVVV
201: ESSHGGDDPE MWISVDGIVI MHVKNLQWKF RGNQMVLVDK THVMVYYDVH DWLFGSSEST ASSGLFVFKP VAVGGMVDDR YNSASSGYGT LNDFCLFLYA
301: WKVV

Best Arabidopsis Sequence Match ( AT5G48270.1 )
(BLAST)

001: MLSFRMPSIG SQPTAFAAKI TDNPKTVAQL KSAASPSPHS TVTCGYQAHV AGFFRNVTVL WSKNLMNHSL TVMVSSLDND MNYCCKIDLV KPWQFWSKRG
101: SKSFDVEGNF VEVFWDLRSA KLAGNGSPEP VSDYYVAVVS DEEVVLLLGD LKQKAYKRTK SRPALVEGFI YFKKESIFGK KTFSTRARFD EQRKEHEVVV
201: ESSNGAAEPE MWISVDGIVV VNVKNLQWKF RGNQMVMVDR TPVMVYYDVH DWLFASSETA ASSGLFLFKP VPVGAMVDES FSDAEEGDSG GGSSPLSRYN
301: SASSGFGPLH DFCLFLYAWK LE

Arabidopsis Description

DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9LUA7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.