Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G28150.1 | CDX82685 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | CDX94377 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | CDY69293 | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86191 | Canola | plastid | 97.95 | 97.95 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 90.44 | 91.7 |
| CDY00013 | Canola | cytosol, plastid | 91.81 | 91.19 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 76.45 | 78.05 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 73.72 | 76.6 |
| CDY21108 | Canola | plastid | 72.35 | 75.18 |
| CDY30020 | Canola | cytosol, plastid | 70.99 | 73.76 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 68.6 | 70.53 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 68.94 | 67.11 |
| KRG92651 | Soybean | cytosol | 68.26 | 66.67 |
| KRH68710 | Soybean | plastid | 66.55 | 65.66 |
| KRG96949 | Soybean | cytosol, plastid | 67.92 | 65.03 |
| Solyc01g097790.2.1 | Tomato | cytosol | 65.19 | 63.88 |
| PGSC0003DMT400057872 | Potato | cytosol | 65.19 | 63.88 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 55.29 | 62.07 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 92.49 | 61.04 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 54.95 | 60.98 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 58.36 | 58.76 |
| EER93250 | Sorghum | cytosol, plastid | 57.68 | 58.08 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 57.34 | 57.93 |
| Zm00001d013042_P001 | Maize | plastid | 57.34 | 57.73 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 56.66 | 56.85 |
| TraesCS5A01G456500.1 | Wheat | plastid | 56.31 | 56.51 |
| Zm00001d034527_P001 | Maize | plastid | 55.63 | 55.44 |
| Os07t0572300-01 | Rice | plastid | 52.22 | 53.87 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 56.31 | 53.57 |
| HORVU2Hr1G038060.1 | Barley | plastid | 50.17 | 52.5 |
| TraesCS2D01G204300.1 | Wheat | plastid | 48.81 | 50.53 |
| TraesCS2B01G223900.1 | Wheat | plastid | 48.81 | 50.53 |
| TraesCS5B01G465500.1 | Wheat | plastid | 56.66 | 49.4 |
| TraesCS2A01G196200.1 | Wheat | plastid | 47.1 | 48.76 |
| Zm00001d021869_P001 | Maize | plastid | 46.76 | 48.24 |
| OQU90135 | Sorghum | plastid | 48.81 | 42.06 |
| CDY00849 | Canola | nucleus | 38.57 | 38.83 |
| CDY27882 | Canola | nucleus | 38.57 | 38.83 |
| CDX86317 | Canola | plastid | 34.81 | 33.22 |
| CDY48744 | Canola | mitochondrion, plastid | 34.47 | 33.22 |
| CDY19961 | Canola | plastid | 34.47 | 33.01 |
| CDY05690 | Canola | mitochondrion, plastid | 33.79 | 33.0 |
| CDX77134 | Canola | cytosol, plastid | 36.18 | 32.82 |
| CDY00069 | Canola | plastid | 34.47 | 32.79 |
| CDX85324 | Canola | plastid | 31.06 | 32.73 |
| CDY30531 | Canola | plastid | 34.81 | 31.1 |
| CDY66553 | Canola | cytosol | 29.01 | 30.14 |
| CDX82547 | Canola | cytosol | 29.01 | 29.21 |
| CDY51100 | Canola | cytosol | 30.72 | 26.47 |
| CDX69793 | Canola | nucleus | 33.79 | 26.33 |
| CDX85733 | Canola | cytosol, nucleus, plastid | 30.38 | 25.95 |
| CDX97072 | Canola | nucleus | 33.79 | 25.58 |
| CDX79683 | Canola | cytosol | 26.96 | 24.92 |
| CDX84556 | Canola | cytosol | 26.96 | 24.61 |
| CDX76763 | Canola | plastid | 26.28 | 22.06 |
| CDY56275 | Canola | cytosol | 11.26 | 21.57 |
| CDY33155 | Canola | cytosol | 25.26 | 18.5 |
Protein Annotations
| EnsemblPlants:CDY52485 | EnsemblPlantsGene:GSBRNA2T00007157001 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF40 | PFAM:PF05910 |
| ProteinID:CDY52485 | ProteinID:CDY52485.1 | SEG:seg | UniParc:UPI0004EE694E | UniProt:A0A078IN31 | MapMan:35.2 |
Description
BnaC07g49460DBnaC07g49460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN31]
Coordinates
chrLK033095:-:63400..64463
Molecular Weight (calculated)
32283.9 Da
IEP (calculated)
9.035
GRAVY (calculated)
-0.062
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDFPSCFGE NGVQVADSSS SNSGKNAQNL VACVYQCRIR GRSCLITVTW AKSLMGQSVT VGVDDSCNNQ SLCKVEIKPW LFTKRKGSKS LEAYSCKIDV
101: FWDLSSAKFG SGPEALGGFY VSVVVDKEMV LLLGDMRKEA FKKTNASPSS SLGAVFIAKK EHVFGKRSFA TKAQLCADGK IHDVVIECDT SVTDPCLVVR
201: VDGKTLLQVK RLKWKFRGND TIVVNRMAVE VLWDVHSWLF GMPSVGNAVF MFRTCQSSSE KSLSFSQDIM ATTTNSKSQS FGFSLILYAW KNE
101: FWDLSSAKFG SGPEALGGFY VSVVVDKEMV LLLGDMRKEA FKKTNASPSS SLGAVFIAKK EHVFGKRSFA TKAQLCADGK IHDVVIECDT SVTDPCLVVR
201: VDGKTLLQVK RLKWKFRGND TIVVNRMAVE VLWDVHSWLF GMPSVGNAVF MFRTCQSSSE KSLSFSQDIM ATTTNSKSQS FGFSLILYAW KNE
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.