Factsheet for TraesCS5B01G465500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G251600.2
TraesCS3B01G281100.2
TraesCS3D01G252000.2
TraesCS5A01G385300.3
TraesCS5B01G390300.3
TraesCS5D01G395300.2
TraesCS6A01G180500.1
TraesCS6D01G164600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	TraesCS5A01G385300.3	AT1G05410.1	21798944
AT3G04860.1	TraesCS5B01G390300.3	AT1G05410.1	21798944
AT3G04860.1	TraesCS5D01G395300.2	AT1G05410.1	21798944
AT3G04860.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT3G04860.1	TraesCS6D01G164600.1	AT4G32190.1	21798944
AT5G28150.1	TraesCS3A01G251600.2	AT4G26100.1	21798944
AT5G28150.1	TraesCS3B01G281100.2	AT4G26100.1	21798944
AT5G28150.1	TraesCS3D01G252000.2	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G456500.1	Wheat	plastid	85.12	97.95
HORVU5Hr1G109570.1	Barley	cytosol, plastid	84.23	96.92
TraesCS5D01G467300.1	Wheat	cytosol, plastid	88.69	96.75
EER93250	Sorghum	cytosol, plastid	77.38	89.35
Zm00001d013042_P001	Maize	plastid	76.49	88.32
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	76.19	87.97
Zm00001d034527_P001	Maize	plastid	75.6	86.39
GSMUA_Achr5P24690_001	Banana	cytosol	63.39	73.45
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	56.25	72.41
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	55.65	70.83
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	53.87	63.51
Solyc01g097790.2.1	Tomato	cytosol	55.95	62.88
VIT_05s0020g03340.t01	Wine grape	cytosol	55.95	62.67
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	55.95	62.67
PGSC0003DMT400057872	Potato	cytosol	55.65	62.54
KRH71412	Soybean	cytosol	55.95	62.46
KRH32026	Soybean	cytosol, plastid	55.65	62.33
KRG95548	Soybean	cytosol	54.46	60.8
KRG92651	Soybean	cytosol	54.17	60.67
KRH68710	Soybean	plastid	53.57	60.61
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	53.87	60.13
KRG96949	Soybean	cytosol, plastid	53.27	58.5
TraesCS2B01G223900.1	Wheat	plastid	48.81	57.95
AT5G28150.1	Thale cress	cytosol, plastid	49.7	57.79
AT3G04860.1	Thale cress	plastid	48.81	56.75
CDY52485	Canola	plastid	49.4	56.66
Bra009991.1-P	Field mustard	plastid	49.4	56.66
CDX86191	Canola	plastid	49.4	56.66
KRH67230	Soybean	cytosol	52.38	56.23
CDY00013	Canola	cytosol, plastid	48.51	55.25
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	48.51	53.8
Solyc09g075960.1.1	Tomato	nucleus, peroxisome, plasma membrane	48.21	53.47
CDY30020	Canola	cytosol, plastid	44.35	52.84
CDY21108	Canola	plastid	44.35	52.84
CDY72112	Canola	cytosol, peroxisome, plastid	44.05	52.48
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	44.64	52.45
CDY50761	Canola	cytosol, peroxisome, plastid	44.64	52.26
Bra040118.1-P	Field mustard	plastid	43.75	52.13
Bra036119.1-P	Field mustard	mitochondrion	48.51	42.67
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	48.51	36.71
TraesCS3B01G451100.1	Wheat	plastid	33.93	35.62
TraesCS6B01G189500.1	Wheat	cytosol	29.76	32.05
TraesCS1B01G032400.1	Wheat	cytosol	28.87	31.8
TraesCS2B01G308700.1	Wheat	cytosol	29.17	29.25
TraesCS7B01G175700.1	Wheat	plastid	25.3	28.15
TraesCS5B01G130100.1	Wheat	plastid	25.89	27.44
TraesCS4B01G012200.1	Wheat	cytosol	25.3	24.08
TraesCS4B01G134800.1	Wheat	plastid	22.62	24.05
TraesCS5B01G224600.1	Wheat	plastid	25.6	20.77
TraesCS7B01G048400.1	Wheat	plastid	21.43	18.32

Protein Annotations

EnsemblPlants:TraesCS5B01G465500.1	EnsemblPlantsGene:TraesCS5B01G465500	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF4	PFAM:PF05910
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:639961156..639963987

Molecular Weight (calculated)

37321.3 Da

IEP (calculated)

8.904

GRAVY (calculated)

-0.020

Length

336 amino acids

Sequence
(BLAST)

001: MRDFPSCFGE SGVQIADAAS SSSSAGKGAA QNLVTCLYQT QLAGRPCVVS VTWSKSLMGQ GLSVAVDGLA GQSLCKADIK PWLFSKKKGS KSLDADGAKV
101: DIFWDLSAAR FGAGPEPLEG FYVALLFDLE LALLLGDMKK DAYRKTGANR PALNAAFVAR KEHIYGKKIY SAKAQFCDNG QFHDLVIECD TVGLKDPCLE
201: IRIDKKPVMQ VKRLAWKFRG NQTILVDGLP VEVFWDVHSW LFGPTTASNA VFMFQTCQAP EKSMPWSYSQ IFRESQLQGL GFSLILHAWK IERQIILLRI
301: MELRCYNLLK ITIFCAIWTL SKTRNCNHNP CPKWSA

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.