Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH68710 | Soybean | plastid | 77.54 | 74.41 |
| KRG92651 | Soybean | cytosol | 77.54 | 73.67 |
| Solyc01g097790.2.1 | Tomato | cytosol | 76.84 | 73.24 |
| KRG96949 | Soybean | cytosol, plastid | 78.6 | 73.2 |
| PGSC0003DMT400057872 | Potato | cytosol | 76.14 | 72.58 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 76.49 | 72.43 |
| VIT_07s0151g00930.t01 | Wine grape | cytosol, plastid | 75.79 | 72.0 |
| VIT_05s0020g03340.t01 | Wine grape | cytosol | 72.63 | 69.0 |
| CDY52485 | Canola | plastid | 70.53 | 68.6 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 69.12 | 68.17 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 62.11 | 67.82 |
| Bra009991.1-P | Field mustard | plastid | 69.47 | 67.58 |
| CDX86191 | Canola | plastid | 69.47 | 67.58 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 67.72 | 66.55 |
| CDY00013 | Canola | cytosol, plastid | 68.77 | 66.44 |
| AT3G04860.1 | Thale cress | plastid | 67.02 | 66.09 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 61.05 | 65.91 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 62.46 | 63.12 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 63.16 | 62.94 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 63.16 | 62.72 |
| Zm00001d013042_P001 | Maize | plastid | 63.16 | 61.86 |
| EER93250 | Sorghum | cytosol, plastid | 63.16 | 61.86 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 62.81 | 61.51 |
| Bra040118.1-P | Field mustard | plastid | 60.7 | 61.35 |
| CDY30020 | Canola | cytosol, plastid | 60.7 | 61.35 |
| CDY21108 | Canola | plastid | 60.35 | 60.99 |
| TraesCS5A01G456500.1 | Wheat | plastid | 62.46 | 60.96 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 62.46 | 60.96 |
| Zm00001d034527_P001 | Maize | plastid | 61.75 | 59.86 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 62.46 | 57.79 |
| Os07t0572300-01 | Rice | plastid | 55.44 | 55.63 |
| HORVU2Hr1G038060.1 | Barley | plastid | 53.68 | 54.64 |
| TraesCS5B01G465500.1 | Wheat | plastid | 63.51 | 53.87 |
| TraesCS2B01G223900.1 | Wheat | plastid | 51.93 | 52.3 |
| TraesCS2D01G204300.1 | Wheat | plastid | 51.93 | 52.3 |
| Zm00001d021869_P001 | Maize | plastid | 50.88 | 51.06 |
| Bra036119.1-P | Field mustard | mitochondrion | 68.42 | 51.05 |
| TraesCS2A01G196200.1 | Wheat | plastid | 50.53 | 50.88 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 68.77 | 44.14 |
| OQU90135 | Sorghum | plastid | 52.28 | 43.82 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 43.51 | 41.47 |
| VIT_12s0057g01390.t01 | Wine grape | mitochondrion | 40.7 | 37.18 |
| VIT_17s0000g09400.t01 | Wine grape | cytosol | 42.81 | 37.08 |
| VIT_08s0007g03840.t01 | Wine grape | nucleus | 38.25 | 36.21 |
| VIT_01s0137g00740.t01 | Wine grape | cytosol | 36.49 | 34.67 |
| VIT_04s0008g05970.t01 | Wine grape | plastid | 37.89 | 29.11 |
| VIT_14s0030g01700.t01 | Wine grape | plastid | 32.98 | 28.83 |
Protein Annotations
| ArrayExpress:VIT_14s0030g01760 | EMBL:AM480132 | EMBL:FN596249 | EnsemblPlants:VIT_14s0030g01760.t01 | EnsemblPlantsGene:VIT_14s0030g01760 | EntrezGene:100267457 |
| EntrezGene:LOC100267457 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF4 | PFAM:PF05910 | ProteinID:CAN64151 |
| ProteinID:CAN64151.1 | ProteinID:CCB58095 | ProteinID:CCB58095.1 | RefSeq:XP_002277386 | RefSeq:XP_002277386.1 | UniParc:UPI0002109955 |
| UniProt:F6HTT4 | wikigene:100267457 | wikigene:LOC100267457 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr14:+:6637247..6646958
Molecular Weight (calculated)
31809.3 Da
IEP (calculated)
8.921
GRAVY (calculated)
-0.079
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFPSCFGE NGVQVADSSS SNATKTAQNL VTCVYQCRLR GRSCLITVVW SKNLMGQGLS VGIDDSANQS LCKVDIKPWL FSKRKGSKSL EANSSKIDIY
101: WDFSSAKFGS GPEPLEGFYV GVVFDRQMVL LLGDLRKEAF KKTNATPVPS NAVFIAKREN IFGKKVFRTK AQFCDNGQIH DLMIECDTIG VTDPYLVIRV
201: DSKIVMQVKQ LRWKFRGNHT IAVDGLAVEV FWDVHNWLFS TTLGNAVFLF KTCLSAEKLW ASQPLSDPNS QALSFSLILH ALKNE
101: WDFSSAKFGS GPEPLEGFYV GVVFDRQMVL LLGDLRKEAF KKTNATPVPS NAVFIAKREN IFGKKVFRTK AQFCDNGQIH DLMIECDTIG VTDPYLVIRV
201: DSKIVMQVKQ LRWKFRGNHT IAVDGLAVEV FWDVHNWLFS TTLGNAVFLF KTCLSAEKLW ASQPLSDPNS QALSFSLILH ALKNE
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.