Factsheet for VIT_04s0008g05970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G25200.1	Thale cress	plastid	41.24	43.22
CDY56275	Canola	cytosol	17.79	43.14
Bra007811.1-P	Field mustard	plastid	40.16	42.57
CDX76763	Canola	plastid	39.62	42.12
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	32.34	40.0
GSMUA_Achr9P13220_001	Banana	mitochondrion, peroxisome, plastid	39.35	38.42
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	29.11	37.89
VIT_05s0020g03340.t01	Wine grape	cytosol	30.19	37.33
TraesCS5A01G226100.1	Wheat	plastid	40.16	35.99
TraesCS5D01G233300.1	Wheat	plastid	39.89	35.75
TraesCS5B01G224600.1	Wheat	plastid	39.89	35.75
GSMUA_Achr3P04550_001	Banana	plastid	25.61	35.71
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	38.01	34.64
Zm00001d050436_P001	Maize	plastid	38.01	34.56
VIT_06s0061g01360.t01	Wine grape	plastid	27.76	34.45
GSMUA_Achr5P22830_001	Banana	cytosol, nucleus, peroxisome	36.12	34.45
Zm00001d032164_P001	Maize	plastid	37.2	34.16
VIT_14s0030g01700.t01	Wine grape	plastid	29.92	34.05
Zm00001d020470_P001	Maize	plastid	38.54	33.97
Os08t0439600-00	Rice	plastid	36.66	33.5
EES13906	Sorghum	plastid	37.74	33.49
HORVU5Hr1G065520.1	Barley	plastid	40.16	32.96
Os09t0416600-02	Rice	plastid	39.08	32.66
Zm00001d005752_P001	Maize	plastid	36.93	32.54
KXG35635	Sorghum	plastid	38.01	31.61
VIT_17s0000g09400.t01	Wine grape	cytosol	27.49	31.0
VIT_01s0137g00740.t01	Wine grape	cytosol	25.07	31.0
VIT_12s0057g01390.t01	Wine grape	mitochondrion	25.61	30.45
VIT_08s0007g03840.t01	Wine grape	nucleus	23.99	29.57
TraesCS7A01G146000.1	Wheat	plastid	26.68	29.03
Zm00001d045119_P001	Maize	plastid	27.22	28.77
EER87970	Sorghum	plastid	27.49	28.41
Os06t0181800-00	Rice	plastid	26.68	28.21
TraesCS7B01G048400.1	Wheat	plastid	27.76	26.21
TraesCS7D01G147500.1	Wheat	plastid	27.22	25.7
HORVU7Hr1G029920.1	Barley	mitochondrion	27.49	25.63
Os02t0695050-00	Rice	extracellular, golgi, mitochondrion	16.44	23.46
Zm00001d037575_P001	Maize	cytosol	11.59	17.84

Protein Annotations

EntrezGene:100262872	wikigene:100262872	MapMan:35.2	EMBL:AM446651	ProteinID:CAN69699	ProteinID:CAN69699.1
ProteinID:CCB46832	ProteinID:CCB46832.1	ncoils:Coil	InterPro:DUF868_pln	UniProt:F6H3J7	EMBL:FN595231
EntrezGene:LOC100262872	wikigene:LOC100262872	PFAM:PF05910	PANTHER:PTHR31972	PANTHER:PTHR31972:SF3	TIGR:TC67275
UniParc:UPI0001983165	ArrayExpress:VIT_04s0008g05970	EnsemblPlantsGene:VIT_04s0008g05970	EnsemblPlants:VIT_04s0008g05970.t01	unigene:Vvi.16272	RefSeq:XP_002285361
RefSeq:XP_002285361.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:5662347..5663800

Molecular Weight (calculated)

41464.3 Da

IEP (calculated)

9.487

GRAVY (calculated)

-0.375

Length

371 amino acids

Sequence
(BLAST)

001: MSDHHSSPFP SCFRPPSAPA AAAAAAVDHL RPPEAPAGSG NPNLATCVYH TDLGIFTLTW SRNFFGRSLH LQLHPSAAAN LSPLSLSNPL SLSTPAFHLH
101: IKPFVFWKKY GSKKLHVAGA PGGRDIRVFW DLTRAKFGSW PEPQHGFYVA VVADGEMILL VGDSEKEAYN KTRAKKAERT QVLVLRREHV FGNKVYTTRA
201: SFGGKTREIS IDCSVGDDPR LSFSVDRKRV LQIKRLKWKF RGNEKIEVDG IPIQVSWDVY NWLFDDVMES HAVFMFKFER VGFEEEDEEL QQQQQHLNEK
301: NGMALCGFGM NGIERKKMKK SLLKTTRSSS SSSLSSASSG CSSSVMEWAS TEEMELKSPS GFSLLVYAWK S

Best Arabidopsis Sequence Match ( AT5G11000.1 )
(BLAST)

001: MSPSWLRPTA DHNHPPPQPP SQSPSPLSSG DPNLTTCLYQ TDHGVFYLTW SRTFLGGHSV NLFLHSQDYY NHSSPLSFSS ADLSLSSAVS FHLNLNTLAF
101: WKKRGSRFVS PKIQVFWDLS KAKFDSGSEP RSGFYIAVVV DGEMGLLVGD SVKEAYARAK SAKPPTNPQA LLLRKEHVFG ARVFTTKARF GGKNREISID
201: CRVDEDAKLC FSVDSKQVLQ IKRLRWKFRG NEKVEIDGVH VQISWDVYNW LFQSKSSGDG GGGGGHAVFM FRFESDPEAE EVCETKRKEE EDEKNRNGIV
301: LWKPKKQCGN SFGIKGIVEW RKMRKRFVKS KRSSSSSSIS MSSASSACSS SVMEWASSAD EAEYGGGGCS GSGSGNGLGF SLLVYAWIK

Arabidopsis Description

AT5g11000/T30N20_270 [Source:UniProtKB/TrEMBL;Acc:Q9LEU1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.