Factsheet for VIT_17s0000g09400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57148	Soybean	cytosol	79.03	79.75
PGSC0003DMT400046694	Potato	cytosol	77.2	79.62
Solyc03g112130.1.1	Tomato	cytosol	76.9	79.56
KRH03859	Soybean	cytosol	63.83	78.36
KRH54304	Soybean	cytosol	75.08	75.77
VIT_01s0137g00740.t01	Wine grape	cytosol	69.0	75.67
KRH63641	Soybean	cytosol	74.77	75.46
GSMUA_AchrUn_...	Banana	plastid	50.76	59.43
GSMUA_Achr10P...	Banana	cytosol	53.19	55.03
Zm00001d042425_P001	Maize	plastid	50.15	53.05
HORVU3Hr1G092470.1	Barley	plastid	49.24	51.43
TraesCS3A01G415900.1	Wheat	plastid	49.54	51.26
TraesCS3B01G451100.1	Wheat	plastid	49.85	51.25
EES04078	Sorghum	plastid	50.15	50.93
Os01t0909400-01	Rice	cytosol, plastid	50.15	50.77
TraesCS3D01G411600.1	Wheat	plastid	49.85	50.62
VIT_12s0057g01390.t01	Wine grape	mitochondrion	44.68	47.12
Os05t0108400-01	Rice	cytosol	41.03	44.12
VIT_05s0020g03340.t01	Wine grape	cytosol	39.21	43.0
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	37.08	42.81
Zm00001d035694_P001	Maize	cytosol	39.51	42.76
TraesCS1D01G026300.1	Wheat	cytosol	39.21	42.43
TraesCS1A01G026000.1	Wheat	cytosol	39.21	42.43
TraesCS1B01G032400.1	Wheat	cytosol	39.21	42.3
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	37.99	41.67
VIT_06s0061g01360.t01	Wine grape	plastid	32.22	35.45
KXG21057	Sorghum	mitochondrion	40.12	34.46
VIT_08s0007g03840.t01	Wine grape	nucleus	27.36	29.9
VIT_04s0008g05970.t01	Wine grape	plastid	31.0	27.49
VIT_14s0030g01700.t01	Wine grape	plastid	27.05	27.3

Protein Annotations

ArrayExpress:VIT_17s0000g09400	EMBL:FN594950	EnsemblPlants:VIT_17s0000g09400.t01	EnsemblPlantsGene:VIT_17s0000g09400	EntrezGene:100243254	EntrezGene:LOC100243254
InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF12	PFAM:PF05910	ProteinID:CCB42928	ProteinID:CCB42928.1
RefSeq:XP_002277204	RefSeq:XP_002277204.1	RefSeq:XP_010663087.1	SEG:seg	UniParc:UPI000210AC16	UniProt:F6GTR2
wikigene:100243254	wikigene:LOC100243254	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr17:+:11012092..11013702

Molecular Weight (calculated)

36835.0 Da

IEP (calculated)

8.260

GRAVY (calculated)

-0.275

Length

329 amino acids

Sequence
(BLAST)

001: MQDPIGIPAC FSSVEKQTDD PAAVTRSGQS VFMYVYRTKI ADQCRLITIT WCKNLLLHGL SVAVEGPDGE SQYTCKVELK PWYFWRKQGS KRFVVDDKPV
101: DIFWDLKAAK FNGETEPSSE YYVAVVCNEE VVLLLGDLKK DAYRKTGCRP ALIDPILVSK KEHIFGKKKF STKAKFHERG RFHDISIECK NRSGGSGGSM
201: GNGNSCGRVD PEMEIRIDGH LVIHVKHLQW KFRGNESIHV NKLRVEVYWD VHDWLFSPGL RHALFIFKPL MSSTSPTSIS ISTSSSLPLS SLTSTTPLSS
301: QTGSCDAAEG FNAGGSSEFC LFLYAWKVE

Best Arabidopsis Sequence Match ( AT4G12690.2 )
(BLAST)

001: MSLRSESSTA EKITEDPVTY KTAQSSVTCI YQAHMVGFWR NVRVLWSKNL MNHSLTVMVT SVQGDMNYCC KVDLKPWHFW YKKGYKSFEV EGNQVDVYWD
101: FRSAKFNGGP EPSSDFYVAL VSEEEVVLLL GDHKKKAFKR TKSRPSLVDA ALFYKKENVF GKKIFSTRAK FHDRKREHEI VVESSTGAKE PEMWISVDGI
201: VLVQVRNLQW KFRGNQTVLV DKEPVQVFWD VYDWLFSTPG TGHGLFIFKP ESGESETSNE TKNCSASSSS SSSEFCLFLY AWKLE

Arabidopsis Description

At4g12690 [Source:UniProtKB/TrEMBL;Acc:Q9SU17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.