CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042425_P001	Maize	plastid	89.2	92.93
HORVU3Hr1G092470.1	Barley	plastid	77.47	79.68
Os01t0909400-01	Rice	cytosol, plastid	79.01	78.77
TraesCS3A01G415900.1	Wheat	plastid	76.85	78.3
TraesCS3D01G411600.1	Wheat	plastid	77.47	77.47
TraesCS3B01G451100.1	Wheat	plastid	75.93	76.88
Solyc03g112130.1.1	Tomato	cytosol	51.54	52.52
PGSC0003DMT400046694	Potato	cytosol	51.54	52.35
VIT_01s0137g00740.t01	Wine grape	cytosol	47.84	51.67
GSMUA_Achr10P...	Banana	cytosol	50.0	50.94
KRH03859	Soybean	cytosol	41.98	50.75
VIT_17s0000g09400.t01	Wine grape	cytosol	50.93	50.15
KRH57148	Soybean	cytosol	50.31	50.0
KRH54304	Soybean	cytosol	49.07	48.77
KRH63641	Soybean	cytosol	48.46	48.16
OQU84582	Sorghum	cytosol	38.58	38.94
EER93250	Sorghum	cytosol, plastid	32.72	36.43
KXG21057	Sorghum	mitochondrion	40.12	33.94
OQU90135	Sorghum	plastid	30.56	29.12
KXG26216	Sorghum	cytosol	26.85	23.32
EES13906	Sorghum	plastid	28.7	22.25
KXG22966	Sorghum	plastid	21.3	21.1
KXG35635	Sorghum	plastid	28.4	20.63
EER87970	Sorghum	plastid	22.53	20.33
OQU82880	Sorghum	plastid	20.06	19.76

Protein Annotations

EnsemblPlants:EES04078	EnsemblPlantsGene:SORBI_3003G397000	EntrezGene:8078712	InterPro:DUF868_pln	ncoils:Coil	PANTHER:PTHR31972
PANTHER:PTHR31972:SF12	PFAM:PF05910	ProteinID:EES04078	ProteinID:EES04078.1	RefSeq:XP_002458958.1	SEG:seg
UniParc:UPI0001A8552F	UniProt:C5XFK6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:70692923..70694773

Molecular Weight (calculated)

35529.0 Da

IEP (calculated)

7.752

GRAVY (calculated)

-0.244

Length

324 amino acids

Sequence
(BLAST)

001: MMQDLFSVPS CFSAGEKLPD VPASAAATRS GQSAATLVYR AGIAGQDRLV TVTWCRNLLT HGLTVSIEGS AGGGKDKSGG GSSSSSSSRE WSDADGGGGA
101: ASKQGCSTAC KVEMQPWHFW RKYGAKQFHV DGRAVDVVWD LRSARYSDEP EPLSDYYVAV VSDDEVVLLL GNLKKEAFRR TGSRPSLRDA VLVCKKEHVF
201: SKKRFLTKAR FHDRGKLHDI SIECSSSNLS GAGVGVDVDM VIKIDGSVNV LVRHLQWKFR GNECISINHL KVQVYWDAHD WLFGTGMRNA LFIFKPEPPS
301: TTAVDLHTDE CSDFCLLLYA WKLE

Best Arabidopsis Sequence Match ( AT4G12690.2 )
(BLAST)

001: MSLRSESSTA EKITEDPVTY KTAQSSVTCI YQAHMVGFWR NVRVLWSKNL MNHSLTVMVT SVQGDMNYCC KVDLKPWHFW YKKGYKSFEV EGNQVDVYWD
101: FRSAKFNGGP EPSSDFYVAL VSEEEVVLLL GDHKKKAFKR TKSRPSLVDA ALFYKKENVF GKKIFSTRAK FHDRKREHEI VVESSTGAKE PEMWISVDGI
201: VLVQVRNLQW KFRGNQTVLV DKEPVQVFWD VYDWLFSTPG TGHGLFIFKP ESGESETSNE TKNCSASSSS SSSEFCLFLY AWKLE

Arabidopsis Description

At4g12690 [Source:UniProtKB/TrEMBL;Acc:Q9SU17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.