CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90880
EES01354
EES06399

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	EER90880	AT1G05410.1	21798944
AT3G04860.1	EES06399	AT4G32190.1	21798944
AT5G28150.1	EES01354	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021869_P001	Maize	plastid	75.29	90.14
Os07t0572300-01	Rice	plastid	65.88	78.87
TraesCS2D01G204300.1	Wheat	plastid	64.12	77.03
TraesCS2B01G223900.1	Wheat	plastid	62.94	75.62
TraesCS2A01G196200.1	Wheat	plastid	62.94	75.62
HORVU2Hr1G038060.1	Barley	plastid	61.47	74.64
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	44.41	57.85
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	43.53	56.06
EER93250	Sorghum	cytosol, plastid	47.94	56.01
GSMUA_Achr5P24690_001	Banana	cytosol	47.65	55.86
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	46.76	53.0
KRH71412	Soybean	cytosol	46.47	52.49
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	43.82	52.28
KRH32026	Soybean	cytosol, plastid	45.88	52.0
VIT_05s0020g03340.t01	Wine grape	cytosol	45.59	51.67
Solyc01g097790.2.1	Tomato	cytosol	45.29	51.51
KRG92651	Soybean	cytosol	45.0	51.0
PGSC0003DMT400057872	Potato	cytosol	44.71	50.84
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	44.71	50.5
KRG95548	Soybean	cytosol	44.12	49.83
AT5G28150.1	Thale cress	cytosol, plastid	42.06	49.48
KRH68710	Soybean	plastid	42.65	48.82
CDY52485	Canola	plastid	42.06	48.81
AT3G04860.1	Thale cress	plastid	41.47	48.79
Bra009991.1-P	Field mustard	plastid	41.76	48.46
CDX86191	Canola	plastid	41.76	48.46
Bra040118.1-P	Field mustard	plastid	39.71	47.87
KRG96949	Soybean	cytosol, plastid	42.94	47.71
CDY30020	Canola	cytosol, plastid	39.41	47.52
CDY21108	Canola	plastid	39.41	47.52
CDY00013	Canola	cytosol, plastid	40.88	47.12
CDY50761	Canola	cytosol, peroxisome, plastid	39.12	46.34
KRH67230	Soybean	cytosol	42.06	45.69
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	40.59	45.54
CDY72112	Canola	cytosol, peroxisome, plastid	37.65	45.39
Solyc09g075960.1.1	Tomato	nucleus, peroxisome, plasma membrane	40.29	45.21
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	37.94	45.1
Bra036119.1-P	Field mustard	mitochondrion	41.18	36.65
OQU84582	Sorghum	cytosol	30.0	31.78
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	41.47	31.76
EES04078	Sorghum	plastid	29.12	30.56
KXG21057	Sorghum	mitochondrion	31.18	27.68
KXG22966	Sorghum	plastid	24.41	25.38
KXG26216	Sorghum	cytosol	27.35	24.93
OQU82880	Sorghum	plastid	24.12	24.92
EER87970	Sorghum	plastid	20.88	19.78
EES13906	Sorghum	plastid	23.53	19.14
KXG35635	Sorghum	plastid	22.65	17.26

Protein Annotations

EnsemblPlants:OQU90135	EnsemblPlantsGene:SORBI_3002G347400	EntrezGene:8083904	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF15
PFAM:PF05910	ProteinID:OQU90135	ProteinID:OQU90135.1	SEG:seg	unigene:Sbi.16980	UniParc:UPI0009DC9310
UniProt:A0A1W0W751	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:71281001..71283556

Molecular Weight (calculated)

38185.1 Da

IEP (calculated)

9.545

GRAVY (calculated)

-0.117

Length

340 amino acids

Sequence
(BLAST)

001: MRDFASCLSQ SAVQVAHSSS SSGQNLVQCA YLARLRGKPC VVTVTWSKVA SGQAFAIAIH DYSNRCLCKT EVKPWLFSKR KGSKVVELDS GNVEIIWDLS
101: AAKFAAGPEP LEGFRVALLY DLEVVLVLGD LSKEEDRWVL SDALHSDAVM IARKEHIYAK KVYSAKARFL DIGQIHHISI ECDTAGARDP SLEIRIGKKK
201: VLQVKRLAWK FRGNQTIYVD GLPVEVLWDV HDWLFGSSNG CAVFLFQSGH SMEKSLFRTC SQNEKEAQAH RFGFTLILKA WKTDFKPFDQ MSKSARNDTC
301: TSAGLAIIVP CNFKMRVSTD SIRWKIFSRF CTKPASLYKR

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.