Factsheet for Bra040118.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011328.1-P
Bra015422.1-P
Bra017007.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	Bra015422.1-P	AT1G05410.1	21798944
AT3G04860.1	Bra017007.1-P	AT2G19650.1	21798944
AT3G04860.1	Bra011328.1-P	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21108	Canola	plastid	98.23	98.23
CDY30020	Canola	cytosol, plastid	93.97	93.97
AT3G04860.1	Thale cress	plastid	84.75	82.7
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	78.72	77.62
Bra009991.1-P	Field mustard	plastid	75.18	72.35
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	61.35	60.7
KRG96949	Soybean	cytosol, plastid	62.77	57.84
KRH68710	Soybean	plastid	60.64	57.58
KRG92651	Soybean	cytosol	60.99	57.33
Solyc01g097790.2.1	Tomato	cytosol	60.64	57.19
PGSC0003DMT400057872	Potato	cytosol	60.64	57.19
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	60.28	56.48
Bra036119.1-P	Field mustard	mitochondrion	75.53	55.76
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	49.65	53.64
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	53.19	51.55
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	48.23	51.52
EER93250	Sorghum	cytosol, plastid	52.84	51.2
Zm00001d013042_P001	Maize	plastid	52.13	50.52
Os07t0572300-01	Rice	plastid	50.71	50.35
HORVU5Hr1G109570.1	Barley	cytosol, plastid	51.42	49.66
GSMUA_Achr5P24690_001	Banana	cytosol	51.06	49.66
HORVU2Hr1G038060.1	Barley	plastid	49.29	49.64
TraesCS5A01G456500.1	Wheat	plastid	51.06	49.32
TraesCS2D01G204300.1	Wheat	plastid	49.29	49.12
TraesCS2B01G223900.1	Wheat	plastid	48.23	48.06
Zm00001d034527_P001	Maize	plastid	50.0	47.96
TraesCS5D01G467300.1	Wheat	cytosol, plastid	52.13	47.73
TraesCS2A01G196200.1	Wheat	plastid	47.52	47.35
Zm00001d021869_P001	Maize	plastid	46.1	45.77
TraesCS5B01G465500.1	Wheat	plastid	52.13	43.75
OQU90135	Sorghum	plastid	47.87	39.71
Bra015139.1-P	Field mustard	nucleus	39.36	36.76
Bra034367.1-P	Field mustard	plastid	39.01	33.85
Bra037498.1-P	Field mustard	plastid	35.82	31.27
Bra036180.1-P	Field mustard	plastid	35.11	30.75
Bra020708.1-P	Field mustard	mitochondrion	35.11	30.75
Bra001495.1-P	Field mustard	cytosol	30.14	29.21
Bra028555.1-P	Field mustard	nucleus	32.62	26.82
Bra023071.1-P	Field mustard	cytosol	28.37	24.92
Bra008998.1-P	Field mustard	nucleus, peroxisome, plastid	32.98	23.97
Bra007811.1-P	Field mustard	plastid	24.47	19.71

Protein Annotations

EnsemblPlants:Bra040118.1	EnsemblPlants:Bra040118.1-P	EnsemblPlantsGene:Bra040118	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF40
PFAM:PF05910	UniParc:UPI0002544E9F	UniProt:M4FG91	MapMan:35.2	:	:

Description

AT3G04860 (E=1e-138) | unknown protein

Coordinates

chrA01:+:28367214..28368062

Molecular Weight (calculated)

31453.9 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.032

Length

282 amino acids

Sequence
(BLAST)

001: MRDFTSCSSE NGVQVTDPSS SNAVRVSQNL VVCIYRCCIR GGTCLITVTW TKTLMGLCVT IGVDDSCNRS LCKLEIKPWL FTKRKGYKNL EACDVYWDLS
101: SAKFGSSPEP LGGFYVGVLV DKEMVLLLGD MKKEAFKKTN TASSLGAVFI AKKEHVFGKR TFATKARFSG DGETHDLVVE CDTSVSDPCL VVCVDGKTLM
201: EVKRLRWKFR GNETIVVNRV SVEVLWDVHS WFFGVPSSPG NGVFMFRTCQ AVEKTWSSTQ VPTSLRPQSF GFTLFLYAWK NE

Best Arabidopsis Sequence Match ( AT3G04860.1 )
(BLAST)

001: MRDFPSCSGE NGVQIADSSS SSSAGRNAQN LVICIYRCRI RGRTCLITVT WTKNLMGQCV TVGVDDSCNR SLCKVEIKPW LFTKRKGSKT LEAYACNIDV
101: FWDLSSAKFG SSPEPLGGFY VGVVVDKEMV LLLGDMKKEA FKKTNAAPSS SLGAVFIAKK EHVFGKRTFA TKAQFSGDGK THDLVIECDT SLSDPCLIVR
201: VDGKILMQVQ RLHWKFRGND TIIVNRISVE VLWDVHSWFF GLPSSPGNAV FMFRTCQSVE KTWSFTQVPT SSKSQSFGFS LILYAWKNE

Arabidopsis Description

AT3g04860/T9J14_19 [Source:UniProtKB/TrEMBL;Acc:Q9CAV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.