CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRG99083
KRH05183
KRH12426
KRH15859
KRH27646
KRH67075
KRH77849

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	KRG99083	AT1G05410.1	21798944
AT3G04860.1	KRH27646	AT1G05410.1	21798944
AT3G04860.1	KRH77849	AT1G05410.1	21798944
AT3G04860.1	KRG95394	AT2G19650.1	21798944
AT3G04860.1	KRH67075	AT2G19650.1	21798944
AT3G04860.1	KRH05183	AT4G32190.1	21798944
AT3G04860.1	KRH15859	AT4G32190.1	21798944
AT5G28150.1	KRH12426	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96949	Soybean	cytosol, plastid	96.63	93.79
KRG92651	Soybean	cytosol	79.12	78.33
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	79.12	78.07
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	74.41	77.54
PGSC0003DMT400057872	Potato	cytosol	69.36	68.9
Solyc01g097790.2.1	Tomato	cytosol	69.02	68.56
Bra009991.1-P	Field mustard	plastid	65.66	66.55
CDX86191	Canola	plastid	65.66	66.55
CDY52485	Canola	plastid	65.66	66.55
CDY00013	Canola	cytosol, plastid	65.99	66.44
KRG95548	Soybean	cytosol	67.0	66.11
KRH32026	Soybean	cytosol, plastid	66.67	66.0
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	57.91	65.9
KRH71412	Soybean	cytosol	66.67	65.78
GSMUA_Achr5P24690_001	Banana	cytosol	63.64	65.17
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	57.91	65.15
AT5G28150.1	Thale cress	cytosol, plastid	62.63	64.36
AT3G04860.1	Thale cress	plastid	61.95	63.67
HORVU5Hr1G109570.1	Barley	cytosol, plastid	61.62	62.67
TraesCS5A01G456500.1	Wheat	plastid	61.28	62.33
KRH67230	Soybean	cytosol	64.98	61.66
EER93250	Sorghum	cytosol, plastid	60.27	61.51
Zm00001d013042_P001	Maize	plastid	60.27	61.51
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	60.27	61.51
CDY72112	Canola	cytosol, peroxisome, plastid	58.25	61.35
CDY50761	Canola	cytosol, peroxisome, plastid	58.92	60.98
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	58.59	60.84
Bra040118.1-P	Field mustard	plastid	57.58	60.64
CDY21108	Canola	plastid	56.9	59.93
Zm00001d034527_P001	Maize	plastid	58.59	59.18
CDY30020	Canola	cytosol, plastid	55.89	58.87
TraesCS5D01G467300.1	Wheat	cytosol, plastid	60.27	58.12
TraesCS5B01G465500.1	Wheat	plastid	60.61	53.57
Os07t0572300-01	Rice	plastid	51.18	53.52
HORVU2Hr1G038060.1	Barley	plastid	49.83	52.86
TraesCS2B01G223900.1	Wheat	plastid	49.49	51.94
TraesCS2D01G204300.1	Wheat	plastid	49.49	51.94
TraesCS2A01G196200.1	Wheat	plastid	48.48	50.88
Bra036119.1-P	Field mustard	mitochondrion	64.98	50.52
Zm00001d021869_P001	Maize	plastid	47.14	49.3
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	65.32	43.69
OQU90135	Sorghum	plastid	48.82	42.65
KRH26585	Soybean	plastid	41.41	40.86
KRH22720	Soybean	plastid	41.41	40.73
KRH03859	Soybean	cytosol	34.34	38.06
KRH57148	Soybean	cytosol	41.75	38.04
KRH25175	Soybean	cytosol	40.07	37.54
KRH72631	Soybean	cytosol	38.72	37.46
KRH16994	Soybean	cytosol	38.38	37.38
KRH63641	Soybean	cytosol	40.74	37.12
KRH67854	Soybean	cytosol	38.38	37.01
KRH54304	Soybean	cytosol	40.07	36.5
KRG96144	Soybean	nucleus	37.37	36.16
KRH30504	Soybean	plastid	39.06	35.69
KRG90008	Soybean	plastid	36.7	34.6
KRH52365	Soybean	plastid	35.02	31.23
KRH14191	Soybean	cytosol	31.99	30.55
KRH61697	Soybean	plastid	31.65	30.23
KRG96948	Soybean	plastid	31.31	29.81
KRG92733	Soybean	plastid	32.66	29.31
KRH68709	Soybean	plastid	29.97	29.18
KRH34068	Soybean	plastid	32.32	29.0
KRH05263	Soybean	mitochondrion, plastid	30.98	27.06
KRH15788	Soybean	plastid	30.3	26.32

Protein Annotations

EMBL:ACUP02002123	EnsemblPlants:KRH68710	EnsemblPlantsGene:GLYMA_03G245700	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF4
PFAM:PF05910	ProteinID:KRH68710	ProteinID:KRH68710.1	SEG:seg	UniParc:UPI000233A4C2	UniProt:I1JRL6
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:44287239..44289181

Molecular Weight (calculated)

32588.1 Da

IEP (calculated)

8.956

GRAVY (calculated)

-0.091

Length

297 amino acids

Sequence
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSTNKSAQNV VTCVYQCRVG GSSRLITVTW SKNLMGQGLG VGIDDSSSQS LCKVDIKPWG FSKRRGCKSL EVHSCKVDVY
101: WDLSSAKFGS GPEPLGGFYV GAVVDGQMVL LLGDLRKEAF KKTNANPLPH NAALVAKKEH VFGKKLYGTK AVFCDNGQIH DLVIECGTAS VGDPSLVIRI
201: DSKTVMQVKR LRWKFRGNHT ILVDGLAVEV FWDVHNWLFG TSLGNAVFMF RTCLSAADKL WASQPPSDLA WSFSERFPET KLQGLSFSLV LYAWKNQ

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.