Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G28150.1 | CDX82685 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | CDX94377 | AT4G26100.1 | 21798944 |
| AT5G28150.1 | CDY69293 | AT4G26100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036119.1-P | Field mustard | mitochondrion | 83.78 | 97.38 |
| CDY00013 | Canola | cytosol, plastid | 64.64 | 97.29 |
| CDY52485 | Canola | plastid | 61.04 | 92.49 |
| CDX86191 | Canola | plastid | 60.81 | 92.15 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 59.01 | 90.66 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 49.55 | 76.66 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 48.2 | 75.89 |
| CDY21108 | Canola | plastid | 47.75 | 75.18 |
| CDY30020 | Canola | cytosol, plastid | 46.85 | 73.76 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 44.14 | 68.77 |
| KRH68710 | Soybean | plastid | 43.69 | 65.32 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 44.14 | 65.12 |
| KRG96949 | Soybean | cytosol, plastid | 44.59 | 64.71 |
| KRG92651 | Soybean | cytosol | 43.69 | 64.67 |
| Solyc01g097790.2.1 | Tomato | cytosol | 42.34 | 62.88 |
| PGSC0003DMT400057872 | Potato | cytosol | 42.34 | 62.88 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 35.59 | 60.54 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 35.36 | 59.47 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 37.84 | 57.73 |
| Zm00001d013042_P001 | Maize | plastid | 37.61 | 57.39 |
| EER93250 | Sorghum | cytosol, plastid | 37.61 | 57.39 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 37.16 | 56.9 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 37.16 | 56.51 |
| TraesCS5A01G456500.1 | Wheat | plastid | 36.94 | 56.16 |
| Zm00001d034527_P001 | Maize | plastid | 36.49 | 55.1 |
| Os07t0572300-01 | Rice | plastid | 33.78 | 52.82 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 36.49 | 52.6 |
| HORVU2Hr1G038060.1 | Barley | plastid | 32.88 | 52.14 |
| TraesCS2D01G204300.1 | Wheat | plastid | 31.76 | 49.82 |
| TraesCS2B01G223900.1 | Wheat | plastid | 31.53 | 49.47 |
| TraesCS5B01G465500.1 | Wheat | plastid | 36.71 | 48.51 |
| TraesCS2A01G196200.1 | Wheat | plastid | 30.63 | 48.06 |
| Zm00001d021869_P001 | Maize | plastid | 30.63 | 47.89 |
| OQU90135 | Sorghum | plastid | 31.76 | 41.47 |
| CDY27882 | Canola | nucleus | 25.9 | 39.52 |
| CDY00849 | Canola | nucleus | 25.9 | 39.52 |
| CDY48744 | Canola | mitochondrion, plastid | 22.97 | 33.55 |
| CDX86317 | Canola | plastid | 23.2 | 33.55 |
| CDX85324 | Canola | plastid | 20.95 | 33.45 |
| CDY05690 | Canola | mitochondrion, plastid | 22.52 | 33.33 |
| CDY19961 | Canola | plastid | 22.97 | 33.33 |
| CDY00069 | Canola | plastid | 22.97 | 33.12 |
| CDX77134 | Canola | cytosol, plastid | 23.87 | 32.82 |
| CDY30531 | Canola | plastid | 22.97 | 31.1 |
| CDY66553 | Canola | cytosol | 18.92 | 29.79 |
| CDX82547 | Canola | cytosol | 18.92 | 28.87 |
| CDY51100 | Canola | cytosol | 20.5 | 26.76 |
| CDX85733 | Canola | cytosol, nucleus, plastid | 20.5 | 26.53 |
| CDX69793 | Canola | nucleus | 22.3 | 26.33 |
| CDX79683 | Canola | cytosol | 18.47 | 25.87 |
| CDX97072 | Canola | nucleus | 22.3 | 25.58 |
| CDX84556 | Canola | cytosol | 18.47 | 25.55 |
| CDX76763 | Canola | plastid | 17.57 | 22.35 |
| CDY56275 | Canola | cytosol | 7.21 | 20.91 |
| CDY33155 | Canola | cytosol | 17.34 | 19.25 |
Protein Annotations
| EnsemblPlants:CDY59819 | EnsemblPlantsGene:GSBRNA2T00027758001 | GO:A0A078J631 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF40 | PFAM:PF05910 | ProteinID:CDY59819 | ProteinID:CDY59819.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF13AA | UniProt:A0A078J631 | MapMan:35.2 | : |
Description
BnaA09g51660DBnaA09g51660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J631]
Coordinates
chrLK033808:+:34765..37672
Molecular Weight (calculated)
49652.2 Da
IEP (calculated)
9.404
GRAVY (calculated)
-0.063
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTTLHVKGI KTKKFSISEL PNHCCQTHFI SYYLPNLERK EYKYLQNSSF LLRLKLLFKC CLILVSNFFS LILQKNILPL LWRFASSSLS LLTLRLLSKS
101: LLLGDNGSNQ RDSYEDSSDS DAFLIHLSLQ VNKTLRSLPT KCSLKFPREM KDFPSCFGEN GVQVADSSSS NSGKNAQNLV TCIYQCRIRG RTCLITVTWA
201: KTLMGQSVTV GVDDSCNQSL CKVEIKPWLF TKRKGSKSLE VYSCSIDVIW DLASAKFGSG PEALGGFYVG VVVDKEMVLL LGDMKKEAFK KTNASPSSRG
301: AVFIAKKEHV FGKREFATKA QLCSDGVKVH DLVIECDTSV TDPCLVVRVD GKTLLQVKRL KWKFRGNDTI VVNRMAVEVL WDVHSWLFGM PSSAGNAVFM
401: FRTCQSSSDK SLSFSHDIMS TTTTTNSKSQ SSGFSLILYA WKNE
101: LLLGDNGSNQ RDSYEDSSDS DAFLIHLSLQ VNKTLRSLPT KCSLKFPREM KDFPSCFGEN GVQVADSSSS NSGKNAQNLV TCIYQCRIRG RTCLITVTWA
201: KTLMGQSVTV GVDDSCNQSL CKVEIKPWLF TKRKGSKSLE VYSCSIDVIW DLASAKFGSG PEALGGFYVG VVVDKEMVLL LGDMKKEAFK KTNASPSSRG
301: AVFIAKKEHV FGKREFATKA QLCSDGVKVH DLVIECDTSV TDPCLVVRVD GKTLLQVKRL KWKFRGNDTI VVNRMAVEVL WDVHSWLFGM PSSAGNAVFM
401: FRTCQSSSDK SLSFSHDIMS TTTTTNSKSQ SSGFSLILYA WKNE
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.