CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRG99083
KRH05183
KRH12426
KRH15859
KRH27646
KRH67075
KRH77849

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	KRG99083	AT1G05410.1	21798944
AT3G04860.1	KRH27646	AT1G05410.1	21798944
AT3G04860.1	KRH77849	AT1G05410.1	21798944
AT3G04860.1	KRG95394	AT2G19650.1	21798944
AT3G04860.1	KRH67075	AT2G19650.1	21798944
AT3G04860.1	KRH05183	AT4G32190.1	21798944
AT3G04860.1	KRH15859	AT4G32190.1	21798944
AT5G28150.1	KRH12426	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	95.33	95.02
KRH68710	Soybean	plastid	78.33	79.12
KRG96949	Soybean	cytosol, plastid	79.67	78.1
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	73.67	77.54
PGSC0003DMT400057872	Potato	cytosol	71.67	71.91
Solyc01g097790.2.1	Tomato	cytosol	71.67	71.91
Bra009991.1-P	Field mustard	plastid	66.67	68.26
CDX86191	Canola	plastid	66.67	68.26
CDY52485	Canola	plastid	66.67	68.26
KRG95548	Soybean	cytosol	67.33	67.11
AT3G04860.1	Thale cress	plastid	64.0	66.44
CDY00013	Canola	cytosol, plastid	65.0	66.1
AT5G28150.1	Thale cress	cytosol, plastid	63.33	65.74
KRH71412	Soybean	cytosol	65.33	65.12
KRH32026	Soybean	cytosol, plastid	64.67	64.67
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	56.0	64.37
GSMUA_Achr5P24690_001	Banana	cytosol	61.67	63.79
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	55.67	63.26
CDY72112	Canola	cytosol, peroxisome, plastid	59.0	62.77
HORVU5Hr1G109570.1	Barley	cytosol, plastid	61.0	62.67
EER93250	Sorghum	cytosol, plastid	60.67	62.54
CDY50761	Canola	cytosol, peroxisome, plastid	59.67	62.37
TraesCS5A01G456500.1	Wheat	plastid	60.67	62.33
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	59.33	62.24
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	60.33	62.2
Zm00001d013042_P001	Maize	plastid	60.33	62.2
KRH67230	Soybean	cytosol	64.67	61.98
Bra040118.1-P	Field mustard	plastid	57.33	60.99
CDY21108	Canola	plastid	57.0	60.64
Zm00001d034527_P001	Maize	plastid	59.33	60.54
CDY30020	Canola	cytosol, plastid	56.33	59.93
TraesCS5D01G467300.1	Wheat	cytosol, plastid	60.33	58.77
Os07t0572300-01	Rice	plastid	52.33	55.28
TraesCS5B01G465500.1	Wheat	plastid	60.67	54.17
HORVU2Hr1G038060.1	Barley	plastid	49.67	53.21
Zm00001d021869_P001	Maize	plastid	49.33	52.11
TraesCS2D01G204300.1	Wheat	plastid	48.67	51.59
TraesCS2B01G223900.1	Wheat	plastid	48.67	51.59
Bra036119.1-P	Field mustard	mitochondrion	64.33	50.52
TraesCS2A01G196200.1	Wheat	plastid	47.0	49.82
OQU90135	Sorghum	plastid	51.0	45.0
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	64.67	43.69
KRH26585	Soybean	plastid	39.0	38.87
KRH22720	Soybean	plastid	39.0	38.74
KRH03859	Soybean	cytosol	32.0	35.82
KRH57148	Soybean	cytosol	38.67	35.58
KRH63641	Soybean	cytosol	37.67	34.66
KRH72631	Soybean	cytosol	35.33	34.53
KRH25175	Soybean	cytosol	36.33	34.38
KRG96144	Soybean	nucleus	35.0	34.2
KRH67854	Soybean	cytosol	35.0	34.09
KRH54304	Soybean	cytosol	37.0	34.05
KRH16994	Soybean	cytosol	34.33	33.77
KRH30504	Soybean	plastid	36.33	33.54
KRG90008	Soybean	plastid	32.67	31.11
KRH52365	Soybean	plastid	33.67	30.33
KRH14191	Soybean	cytosol	31.0	29.9
KRH61697	Soybean	plastid	30.67	29.58
KRG92733	Soybean	plastid	32.0	29.0
KRH34068	Soybean	plastid	31.33	28.4
KRH68709	Soybean	plastid	28.67	28.2
KRH05263	Soybean	mitochondrion, plastid	31.33	27.65
KRG96948	Soybean	plastid	28.67	27.56
KRH15788	Soybean	plastid	30.0	26.32

Protein Annotations

EMBL:ACUP02012765	EnsemblPlants:KRG92651	EnsemblPlantsGene:GLYMA_20G223700	EntrezGene:100802422	InterPro:DUF868_pln	PANTHER:PTHR31972
PANTHER:PTHR31972:SF4	PFAM:PF05910	ProteinID:KRG92651	ProteinID:KRG92651.1	SEG:seg	UniParc:UPI000233DD0A
UniProt:I1NIP0	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:45826504..45830429

Molecular Weight (calculated)

33574.5 Da

IEP (calculated)

8.414

GRAVY (calculated)

-0.022

Length

300 amino acids

Sequence
(BLAST)

001: MKDFPSCFGE NAVQVADSSS SSASQTAQNL VICVYQCRIR GKCCLITITW SKSLMGQGLS VGIDDSSSNQ CLCKVDIKPW VFSKRRGYKS LEAYSCKIDV
101: YWDLSNARLG VGPEPLEGFY VGVVVDRQMV LLLGDLRKEA FKKSSAIPLP SNAVFVAKKE HVFGKKMFGN KAVFCDNGQI HDLVIECDTS GVSDPCLIIR
201: IDSKTVMQVK RLKWKFRGNH TILVDGLAVE VFWDVYNWLF GTSLGNAVFM FRTCISEEKL WVGQPLSDAN VVQWSFSQRF SETKSQGLGF SQILYAWKND

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.