CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plasma membrane 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053654_P001	Maize	plastid	86.29	93.58
TraesCS6B01G189500.1	Wheat	cytosol	62.62	64.42
TraesCS6D01G150500.1	Wheat	nucleus	62.62	64.22
HORVU6Hr1G032720.1	Barley	cytosol	62.62	63.81
TraesCS6A01G161700.1	Wheat	cytosol	61.99	63.58
Os02t0198800-01	Rice	cytosol, nucleus	65.42	56.45
GSMUA_AchrUn_...	Banana	cytosol	46.42	53.41
AT4G12690.2	Thale cress	nucleus	42.99	48.42
CDY00849	Canola	nucleus	42.99	47.42
CDY27882	Canola	nucleus	42.99	47.42
PGSC0003DMT400069001	Potato	plastid	44.86	46.75
Solyc12g044670.1.1	Tomato	plastid	44.55	46.43
Bra015139.1-P	Field mustard	nucleus	43.3	46.03
AT2G04220.1	Thale cress	cytosol	42.99	44.95
GSMUA_Achr3P12010_001	Banana	cytosol	38.63	44.93
PGSC0003DMT400006698	Potato	mitochondrion	42.68	44.48
VIT_12s0057g01390.t01	Wine grape	mitochondrion	42.68	43.91
CDX85324	Canola	plastid	38.01	43.88
CDX86317	Canola	plastid	41.74	43.65
CDY48744	Canola	mitochondrion, plastid	40.81	43.09
Solyc03g121220.2.1	Tomato	cytosol, mitochondrion, nucleus, plastid	42.68	43.08
CDY00069	Canola	plastid	41.12	42.86
KRH72631	Soybean	cytosol	40.81	42.67
CDY05690	Canola	mitochondrion, plastid	39.88	42.67
CDY19961	Canola	plastid	40.5	42.48
KRH16994	Soybean	cytosol	40.19	42.3
AT5G48270.1	Thale cress	plastid	42.37	42.24
Bra037498.1-P	Field mustard	plastid	42.37	42.11
Bra036180.1-P	Field mustard	plastid	41.43	41.3
Bra020708.1-P	Field mustard	mitochondrion	41.12	40.99
KRG90008	Soybean	plastid	38.32	39.05
EES04078	Sorghum	plastid	38.94	38.58
PGSC0003DMT400076600	Potato	cytosol	35.2	37.92
Solyc12g015900.1.1	Tomato	cytosol	34.89	37.58
EER93250	Sorghum	cytosol, plastid	33.96	37.46
KRH14191	Soybean	cytosol	35.83	36.98
AT3G13229.1	Thale cress	cytosol	31.78	35.29
CDY66553	Canola	cytosol	30.22	34.4
Bra001495.1-P	Field mustard	cytosol	30.22	33.33
CDX82547	Canola	cytosol	30.22	33.33
KXG21057	Sorghum	mitochondrion	35.83	30.03
OQU90135	Sorghum	plastid	31.78	30.0
OQU82880	Sorghum	plastid	22.12	21.58
KXG22966	Sorghum	plastid	21.81	21.41
EES13906	Sorghum	plastid	27.41	21.05
KXG26216	Sorghum	cytosol	24.3	20.91
KXG35635	Sorghum	plastid	28.35	20.4
EER87970	Sorghum	plastid	20.87	18.66

Protein Annotations

EnsemblPlants:OQU84582	EnsemblPlantsGene:SORBI_3004G082000	EntrezGene:8082908	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF2
PFAM:PF05910	PFscan:PS51257	ProteinID:OQU84582	ProteinID:OQU84582.1	RefSeq:XP_002451729.1	SEG:seg
UniParc:UPI0001A857BB	UniProt:A0A1Z5RLF4	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:6741067..6742569

Molecular Weight (calculated)

34552.9 Da

IEP (calculated)

7.767

GRAVY (calculated)

-0.266

Length

321 amino acids

Sequence
(BLAST)

001: MHKRSKSCEP YSKMEERIGC TSNAATSCDD SATGRAPSSA AAAAQCSTVS VFLAKINGVA RLVTAVWSKS LINQSFTISI DRPGPGGGGG GGGDGDGPVT
101: HKVELKPWPF WSKKGGKAMD VGGGDRVDMF WDLRSAKFAA GGTSPEPAGG YYVALVSNDE VVLLLGDCKK DAYKRTKARP SLEDAVLVCR RESVFGRRSF
201: AARARLDARR SKEHEIVIEY ALAAAGSSKD PEMWITVDGF VLLHVKSLQW KFRGNETLLV DQAPVQVIWD VHDWLFAGPG TQAVFVFKPG APPEIQEDSG
301: GNGIQGEGTD FCFFLQAWRT E

Best Arabidopsis Sequence Match ( AT4G12690.2 )
(BLAST)

001: MSLRSESSTA EKITEDPVTY KTAQSSVTCI YQAHMVGFWR NVRVLWSKNL MNHSLTVMVT SVQGDMNYCC KVDLKPWHFW YKKGYKSFEV EGNQVDVYWD
101: FRSAKFNGGP EPSSDFYVAL VSEEEVVLLL GDHKKKAFKR TKSRPSLVDA ALFYKKENVF GKKIFSTRAK FHDRKREHEI VVESSTGAKE PEMWISVDGI
201: VLVQVRNLQW KFRGNQTVLV DKEPVQVFWD VYDWLFSTPG TGHGLFIFKP ESGESETSNE TKNCSASSSS SSSEFCLFLY AWKLE

Arabidopsis Description

At4g12690 [Source:UniProtKB/TrEMBL;Acc:Q9SU17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.