Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g015900.1.1 | Tomato | cytosol | 92.62 | 92.62 |
| PGSC0003DMT400069001 | Potato | plastid | 46.31 | 44.81 |
| PGSC0003DMT400006698 | Potato | mitochondrion | 45.97 | 44.48 |
| KRH14191 | Soybean | cytosol | 44.63 | 42.77 |
| Zm00001d015796_P001 | Maize | cytosol | 27.52 | 42.71 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.93 | 42.65 |
| AT3G13229.1 | Thale cress | cytosol | 40.94 | 42.21 |
| CDY66553 | Canola | cytosol | 39.26 | 41.49 |
| Bra001495.1-P | Field mustard | cytosol | 39.93 | 40.89 |
| CDX82547 | Canola | cytosol | 39.93 | 40.89 |
| GSMUA_Achr3P12010_001 | Banana | cytosol | 36.91 | 39.86 |
| Zm00001d053654_P001 | Maize | plastid | 37.25 | 37.5 |
| OQU84582 | Sorghum | cytosol | 37.92 | 35.2 |
| PGSC0003DMT400046694 | Potato | cytosol | 37.58 | 35.11 |
| TraesCS6B01G189500.1 | Wheat | cytosol | 36.58 | 34.94 |
| TraesCS6D01G150500.1 | Wheat | nucleus | 36.58 | 34.82 |
| TraesCS6A01G161700.1 | Wheat | cytosol | 36.24 | 34.5 |
| PGSC0003DMT400057872 | Potato | cytosol | 34.23 | 34.11 |
| HORVU6Hr1G032720.1 | Barley | cytosol | 35.57 | 33.65 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 31.88 | 31.35 |
| Os02t0198800-01 | Rice | cytosol, nucleus | 35.91 | 28.76 |
| PGSC0003DMT400068894 | Potato | plastid | 28.19 | 24.07 |
| PGSC0003DMT400006889 | Potato | nucleus | 12.08 | 23.53 |
| PGSC0003DMT400018411 | Potato | cytosol | 23.83 | 23.43 |
| PGSC0003DMT400089872 | Potato | cytosol, peroxisome, plastid | 25.84 | 22.19 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076600 | EnsemblPlantsGene:PGSC0003DMG400029786 | EntrezGene:107060126 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF2 |
| PFAM:PF05910 | PGSC:PGSC0003DMG400029786 | RefSeq:XP_015163072.1 | UniParc:UPI000296F304 | UniProt:M1CX20 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029786]
Coordinates
chr12:-:10228753..10230232
Molecular Weight (calculated)
34497.1 Da
IEP (calculated)
7.048
GRAVY (calculated)
-0.429
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKLPLEFEA SMNQKQSEDQ KQTEETIINK SGEDFITCIY VAKIAHFFHA ITTTWSKNMT SHTLYIIVEH LSEETHFTCK IDLKSWQFWG KKGLKSFRVG
101: EKRMDIYWDL RSAKFSTRPE PVSDYYVALV SEGEMVLLLG DQNKEAFKRT KSRPAMLDAS LLHKKETIYA KKCFCTRTML GQGKKQHDIT IESVLSGPSD
201: PAMQISVNGT VAIRIANLHW RFRGNEKVFL DNVLVEIFWD VHDWLYSGPN FGPGSFIFKQ GKLEERYSDS GSYINDESCD LQSPSTEFCH FLYAWKTE
101: EKRMDIYWDL RSAKFSTRPE PVSDYYVALV SEGEMVLLLG DQNKEAFKRT KSRPAMLDAS LLHKKETIYA KKCFCTRTML GQGKKQHDIT IESVLSGPSD
201: PAMQISVNGT VAIRIANLHW RFRGNEKVFL DNVLVEIFWD VHDWLYSGPN FGPGSFIFKQ GKLEERYSDS GSYINDESCD LQSPSTEFCH FLYAWKTE
001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
Arabidopsis Description
DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.