Factsheet for PGSC0003DMT400068894

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g028780.1.1	Tomato	mitochondrion	88.83	91.45
KRH52365	Soybean	plastid	50.72	53.15
KRH61697	Soybean	plastid	45.85	51.45
CDY51100	Canola	cytosol	46.42	47.65
CDX85733	Canola	cytosol, nucleus, plastid	45.85	46.65
Bra028555.1-P	Field mustard	nucleus	45.56	46.36
CDX69793	Canola	nucleus	49.28	45.74
AT5G11000.1	Thale cress	cytosol, plastid	50.72	45.5
Bra008998.1-P	Field mustard	nucleus, peroxisome, plastid	50.14	45.1
CDX97072	Canola	nucleus	49.86	44.96
KRH05263	Soybean	mitochondrion, plastid	43.55	44.71
KRH15788	Soybean	plastid	42.69	43.57
PGSC0003DMT400057872	Potato	cytosol	32.09	37.46
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	31.81	36.63
GSMUA_Achr9P13220_001	Banana	mitochondrion, peroxisome, plastid	39.83	36.58
Zm00001d050436_P001	Maize	plastid	41.83	35.78
Zm00001d032164_P001	Maize	plastid	40.69	35.15
EES13906	Sorghum	plastid	41.26	34.45
TraesCS5A01G226100.1	Wheat	plastid	40.69	34.3
TraesCS5D01G233300.1	Wheat	plastid	40.4	34.06
TraesCS5B01G224600.1	Wheat	plastid	40.4	34.06
GSMUA_Achr5P22830_001	Banana	cytosol, nucleus, peroxisome	37.82	33.93
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	39.54	33.91
GSMUA_Achr3P04550_001	Banana	plastid	25.79	33.83
Zm00001d020470_P001	Maize	plastid	40.11	33.25
Os08t0439600-00	Rice	plastid	38.68	33.25
Zm00001d005752_P001	Maize	plastid	39.54	32.78
PGSC0003DMT400046694	Potato	cytosol	29.8	32.6
KXG35635	Sorghum	plastid	40.4	31.61
PGSC0003DMT400069001	Potato	plastid	27.79	31.49
HORVU5Hr1G065520.1	Barley	plastid	40.69	31.42
Os09t0416600-02	Rice	plastid	38.97	30.63
PGSC0003DMT400006698	Potato	mitochondrion	26.93	30.52
PGSC0003DMT400006889	Potato	nucleus	13.18	30.07
PGSC0003DMT400018411	Potato	cytosol	25.5	29.37
PGSC0003DMT400089872	Potato	cytosol, peroxisome, plastid	28.94	29.11
Os06t0181800-00	Rice	plastid	28.94	28.77
Zm00001d045119_P001	Maize	plastid	28.94	28.77
PGSC0003DMT400076600	Potato	cytosol	24.07	28.19
TraesCS7A01G146000.1	Wheat	plastid	27.51	28.15
EER87970	Sorghum	plastid	28.37	27.58
TraesCS7B01G048400.1	Wheat	plastid	28.37	25.19
TraesCS7D01G147500.1	Wheat	plastid	28.37	25.19
HORVU7Hr1G029920.1	Barley	mitochondrion	28.37	24.87
Os02t0695050-00	Rice	extracellular, golgi, mitochondrion	15.76	21.15
Zm00001d037575_P001	Maize	cytosol	13.75	19.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400068894	EnsemblPlantsGene:PGSC0003DMG400026794	EntrezGene:102585370	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF3
PFAM:PF05910	PGSC:PGSC0003DMG400026794	RefSeq:XP_006366515.1	SEG:seg	UniParc:UPI000295A56E	UniProt:M1CJM8
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026794]

Coordinates

chr00:+:18445171..18446502

Molecular Weight (calculated)

39573.1 Da

IEP (calculated)

9.596

GRAVY (calculated)

-0.357

Length

349 amino acids

Sequence
(BLAST)

001: MDSSYQIVAK SKHRNYYSAF PSCFRRPIEV AATALPLPQP PVAVATNPNL ATSLYNTHLG LFALTWSRNL FGRSFHIHFL LNGLSSPHVS PSFHLHIKPF
101: VFWKKHGSKK LDNNVHIFWD LSKAKFGSGP EPRSGFYVAA IVNGEMVLLV GDLPKEAYSR TRARKPDKYS NSNMVLRREH VCGNKLYITK AKFGGKEREI
201: SIDCRIGEDP RLYFSVDNKR VLQIKHLKWK FRGNERIEVD GVGVVVSWDV YNWLFDDDED GYALFMFKFE KSSLDELNNG VEMWSQQSCG FGFETKMMKK
301: GVLRSSSSSS SLSSASSSCS SSVMEWASTE ENELKDPSGF SLLVYAWKT

Best Arabidopsis Sequence Match ( AT5G11000.1 )
(BLAST)

001: MSPSWLRPTA DHNHPPPQPP SQSPSPLSSG DPNLTTCLYQ TDHGVFYLTW SRTFLGGHSV NLFLHSQDYY NHSSPLSFSS ADLSLSSAVS FHLNLNTLAF
101: WKKRGSRFVS PKIQVFWDLS KAKFDSGSEP RSGFYIAVVV DGEMGLLVGD SVKEAYARAK SAKPPTNPQA LLLRKEHVFG ARVFTTKARF GGKNREISID
201: CRVDEDAKLC FSVDSKQVLQ IKRLRWKFRG NEKVEIDGVH VQISWDVYNW LFQSKSSGDG GGGGGHAVFM FRFESDPEAE EVCETKRKEE EDEKNRNGIV
301: LWKPKKQCGN SFGIKGIVEW RKMRKRFVKS KRSSSSSSIS MSSASSACSS SVMEWASSAD EAEYGGGGCS GSGSGNGLGF SLLVYAWIK

Arabidopsis Description

AT5g11000/T30N20_270 [Source:UniProtKB/TrEMBL;Acc:Q9LEU1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.