Factsheet for PGSC0003DMT400069001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044670.1.1	Tomato	plastid	99.03	99.03
PGSC0003DMT400006698	Potato	mitochondrion	84.09	84.09
CDY27882	Canola	nucleus	67.53	71.48
CDY00849	Canola	nucleus	67.53	71.48
Bra015139.1-P	Field mustard	nucleus	69.16	70.53
AT4G12690.2	Thale cress	nucleus	64.61	69.82
AT2G04220.1	Thale cress	cytosol	68.83	69.06
KRH16994	Soybean	cytosol	67.86	68.52
KRH72631	Soybean	cytosol	66.56	66.78
VIT_12s0057g01390.t01	Wine grape	mitochondrion	66.88	66.03
KRG90008	Soybean	plastid	61.69	60.32
CDX86317	Canola	plastid	56.49	56.68
GSMUA_AchrUn_...	Banana	cytosol	51.3	56.63
CDY05690	Canola	mitochondrion, plastid	54.55	56.0
CDX85324	Canola	plastid	50.0	55.4
Bra037498.1-P	Field mustard	plastid	57.79	55.11
CDY48744	Canola	mitochondrion, plastid	54.22	54.93
CDY00069	Canola	plastid	54.22	54.22
Bra020708.1-P	Field mustard	mitochondrion	56.49	54.04
AT5G48270.1	Thale cress	plastid	56.17	53.73
CDY19961	Canola	plastid	52.27	52.61
Bra036180.1-P	Field mustard	plastid	54.87	52.48
GSMUA_Achr3P12010_001	Banana	cytosol	46.75	52.17
Zm00001d015796_P001	Maize	cytosol	31.17	50.0
Zm00001d053654_P001	Maize	plastid	44.81	46.62
PGSC0003DMT400076600	Potato	cytosol	44.81	46.31
OQU84582	Sorghum	cytosol	46.75	44.86
HORVU6Hr1G032720.1	Barley	cytosol	45.78	44.76
TraesCS6B01G189500.1	Wheat	cytosol	45.13	44.55
TraesCS6A01G161700.1	Wheat	cytosol	45.13	44.41
TraesCS6D01G150500.1	Wheat	nucleus	44.81	44.09
PGSC0003DMT400046694	Potato	cytosol	45.45	43.89
PGSC0003DMT400057872	Potato	cytosol	40.91	42.14
Os02t0198800-01	Rice	cytosol, nucleus	42.53	35.22
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	34.42	34.98
PGSC0003DMT400068894	Potato	plastid	31.49	27.79
PGSC0003DMT400006889	Potato	nucleus	12.34	24.84
PGSC0003DMT400089872	Potato	cytosol, peroxisome, plastid	27.6	24.5
PGSC0003DMT400018411	Potato	cytosol	24.03	24.42

Protein Annotations

EnsemblPlants:PGSC0003DMT400069001	EnsemblPlantsGene:PGSC0003DMG400026838	EntrezGene:102584925	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF2
PFAM:PF05910	PGSC:PGSC0003DMG400026838	RefSeq:XP_006366122.1	SEG:seg	UniParc:UPI0002966665	UniProt:M1CJS3
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026838]

Coordinates

chr12:+:51391077..51392764

Molecular Weight (calculated)

34979.1 Da

IEP (calculated)

8.118

GRAVY (calculated)

-0.483

Length

308 amino acids

Sequence
(BLAST)

001: MSYHVTNRSQ SSSSQPPIVQ KLTDDPVNPK NAQSSVTCVY QSHIGGYWRN VTVIWSKNLM NHSVTLTVDS VESDYHQTCK IDLKPWHFWA KKGYKTFEVD
101: GNQLEAYWDL RSAKFSGSPE PCSDFYVALV SEEEVVLLLG DYKKKAYKKT KSRPALVDAL LFYKKEHVFG KKSFSTRAKF DQRKQESDIV VESSTTGPRD
201: PEMWISIDGI VLIHIKNLQW KFRGNETVLV NKQPVQVFWD VHAWLFCSPG SGHGLFIFKP GASEDDSDKE GSSVGGGSDC SDQSKYYSTL SYSKASPFCL
301: FLYAWKIE

Best Arabidopsis Sequence Match ( AT2G04220.1 )
(BLAST)

001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE

Arabidopsis Description

DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.