Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015139.1-P | Field mustard | nucleus | 91.21 | 92.72 |
| CDY00849 | Canola | nucleus | 87.62 | 92.44 |
| CDY27882 | Canola | nucleus | 87.3 | 92.1 |
| AT4G12690.2 | Thale cress | nucleus | 75.9 | 81.75 |
| Solyc12g044670.1.1 | Tomato | plastid | 69.06 | 68.83 |
| PGSC0003DMT400069001 | Potato | plastid | 69.06 | 68.83 |
| VIT_12s0057g01390.t01 | Wine grape | mitochondrion | 67.75 | 66.67 |
| KRH16994 | Soybean | cytosol | 65.47 | 65.9 |
| PGSC0003DMT400006698 | Potato | mitochondrion | 64.82 | 64.61 |
| KRH72631 | Soybean | cytosol | 64.5 | 64.5 |
| Solyc03g121220.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 64.5 | 62.26 |
| KRG90008 | Soybean | plastid | 60.91 | 59.37 |
| AT5G48270.1 | Thale cress | plastid | 61.89 | 59.01 |
| GSMUA_AchrUn_... | Banana | cytosol | 51.14 | 56.27 |
| GSMUA_Achr3P12010_001 | Banana | cytosol | 46.58 | 51.81 |
| Zm00001d015796_P001 | Maize | cytosol | 30.62 | 48.96 |
| Zm00001d053654_P001 | Maize | plastid | 43.0 | 44.59 |
| TraesCS6B01G189500.1 | Wheat | cytosol | 44.63 | 43.91 |
| TraesCS6D01G150500.1 | Wheat | nucleus | 44.3 | 43.45 |
| TraesCS6A01G161700.1 | Wheat | cytosol | 43.97 | 43.13 |
| OQU84582 | Sorghum | cytosol | 44.95 | 42.99 |
| HORVU6Hr1G032720.1 | Barley | cytosol | 43.97 | 42.86 |
| AT3G13229.1 | Thale cress | cytosol | 38.76 | 41.18 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 36.81 | 39.1 |
| AT3G04860.1 | Thale cress | plastid | 35.18 | 37.37 |
| Os02t0198800-01 | Rice | cytosol, nucleus | 42.67 | 35.22 |
| AT2G27770.1 | Thale cress | plastid | 25.08 | 24.06 |
| AT5G11000.1 | Thale cress | cytosol, plastid | 28.34 | 22.36 |
| AT2G25200.1 | Thale cress | plastid | 25.08 | 21.75 |
| AT2G36470.1 | Thale cress | nucleus | 21.82 | 20.49 |
Protein Annotations
| MapMan:35.2 | EntrezGene:814959 | UniProt:A0A178VMQ9 | ProteinID:AAD27916.2 | ProteinID:AAM15482.1 | ProteinID:ABE65426.1 |
| ProteinID:AEC05808.1 | ArrayExpress:AT2G04220 | EnsemblPlantsGene:AT2G04220 | RefSeq:AT2G04220 | TAIR:AT2G04220 | RefSeq:AT2G04220-TAIR-G |
| EnsemblPlants:AT2G04220.1 | TAIR:AT2G04220.1 | InterPro:DUF868_pln | GO:GO:0008150 | RefSeq:NP_178505.1 | ProteinID:OAP07760.1 |
| PFAM:PF05910 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007616 | PO:PO:0009046 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF2 | UniProt:Q9SI11 | UniParc:UPI00000A672E | SEG:seg |
Description
DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
Coordinates
chr2:+:1445085..1446507
Molecular Weight (calculated)
35083.5 Da
IEP (calculated)
8.193
GRAVY (calculated)
-0.473
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.