Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79683 | Canola | cytosol | 81.96 | 84.54 |
| CDX84556 | Canola | cytosol | 82.26 | 83.8 |
| Bra023071.1-P | Field mustard | cytosol | 81.96 | 83.49 |
| CDY33155 | Canola | cytosol | 76.45 | 62.5 |
| VIT_08s0007g03840.t01 | Wine grape | nucleus | 42.51 | 46.18 |
| KRH67854 | Soybean | cytosol | 43.43 | 46.1 |
| KRG96144 | Soybean | nucleus | 42.2 | 44.95 |
| PGSC0003DMT400006889 | Potato | nucleus | 20.8 | 44.44 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 37.0 | 41.16 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 35.78 | 39.8 |
| AT2G27770.1 | Thale cress | plastid | 38.53 | 39.38 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 34.56 | 36.93 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 33.64 | 36.07 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 32.42 | 35.93 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 31.5 | 35.76 |
| GSMUA_Achr11P... | Banana | plastid | 30.58 | 34.48 |
| TraesCS5B01G130100.1 | Wheat | plastid | 30.89 | 31.86 |
| TraesCS5D01G137700.1 | Wheat | plastid | 30.89 | 31.46 |
| TraesCS5A01G130200.1 | Wheat | plastid | 30.28 | 31.43 |
| HORVU5Hr1G041450.1 | Barley | plastid | 30.89 | 31.37 |
| Zm00001d052520_P001 | Maize | plastid | 30.28 | 31.03 |
| OQU82880 | Sorghum | plastid | 30.89 | 30.7 |
| Zm00001d004919_P001 | Maize | plastid | 30.28 | 30.65 |
| KXG22966 | Sorghum | plastid | 29.97 | 29.97 |
| AT3G04860.1 | Thale cress | plastid | 26.3 | 29.76 |
| Zm00001d025337_P001 | Maize | cytosol | 30.89 | 29.28 |
| TraesCS2D01G290200.1 | Wheat | cytosol | 29.66 | 29.22 |
| TraesCS4A01G183900.1 | Wheat | plastid | 28.13 | 29.21 |
| TraesCS4B01G134800.1 | Wheat | plastid | 28.13 | 29.11 |
| TraesCS4D01G129600.1 | Wheat | plastid | 28.13 | 28.93 |
| TraesCS2B01G308700.1 | Wheat | cytosol | 29.36 | 28.66 |
| TraesCS2A01G292300.1 | Wheat | cytosol | 29.36 | 28.32 |
| Os12t0149000-01 | Rice | plastid | 28.13 | 28.05 |
| Zm00001d003829_P001 | Maize | cytosol, nucleus, peroxisome | 29.36 | 27.91 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 24.46 | 27.68 |
| KXG26216 | Sorghum | cytosol | 31.5 | 27.61 |
| Os04t0407500-00 | Rice | cytosol, plastid | 20.8 | 27.2 |
| TraesCS7B01G175700.1 | Wheat | plastid | 23.55 | 25.5 |
| TraesCS7D01G277700.1 | Wheat | plastid | 23.55 | 25.5 |
| HORVU7Hr1G058790.3 | Barley | plastid | 23.55 | 25.41 |
| TraesCS7A01G277900.1 | Wheat | plastid | 22.94 | 25.25 |
| Zm00001d031962_P001 | Maize | plastid | 23.85 | 24.68 |
| AT4G12690.2 | Thale cress | nucleus | 20.18 | 23.16 |
| AT2G04220.1 | Thale cress | cytosol | 20.49 | 21.82 |
| HORVU4Hr1G001870.2 | Barley | cytosol | 22.32 | 21.22 |
| AT2G25200.1 | Thale cress | plastid | 22.94 | 21.19 |
| AT3G13229.1 | Thale cress | cytosol | 18.65 | 21.11 |
| TraesCS4B01G012200.1 | Wheat | cytosol | 22.32 | 20.68 |
| TraesCS4D01G010300.1 | Wheat | cytosol | 22.02 | 20.51 |
| AT5G48270.1 | Thale cress | plastid | 20.18 | 20.5 |
| TraesCS4A01G302100.1 | Wheat | cytosol | 21.71 | 20.06 |
| AT5G11000.1 | Thale cress | cytosol, plastid | 23.55 | 19.79 |
Protein Annotations
| MapMan:35.2 | EntrezGene:818221 | ProteinID:AAD24631.1 | ProteinID:AEC09258.1 | ArrayExpress:AT2G36470 | EnsemblPlantsGene:AT2G36470 |
| RefSeq:AT2G36470 | TAIR:AT2G36470 | RefSeq:AT2G36470-TAIR-G | EnsemblPlants:AT2G36470.1 | TAIR:AT2G36470.1 | InterPro:DUF868_pln |
| GO:GO:0008150 | RefSeq:NP_565847.1 | PFAM:PF05910 | PO:PO:0000013 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31972 |
| PANTHER:PTHR31972:SF16 | UniProt:Q9SJQ8 | UniParc:UPI00000A667D | SEG:seg | : | : |
Description
DUF868 family protein, putative (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SJQ8]
Coordinates
chr2:-:15299067..15301026
Molecular Weight (calculated)
36273.4 Da
IEP (calculated)
8.350
GRAVY (calculated)
-0.513
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGLAACYSE HAIKVSDTYC SGPSNHSYIS PTLPPSIPDT VTTTYRSNLP SSDKPVSVSL TWSDNLTVVI STPPKSYSVS LRKPKGSRKL TSSSGSLNAE
101: ILWDLSEAEY ENNGPEPIRR FFVVVVVNSE ITLGVGDVDH ERDTSSSSSW RVSKTERFSG TCWLTTKAQF SDVGRKHEIQ IQCGGGGGGG GEEGYLWKVK
201: SPETMSVYVD KRKVFSVKKL KWNFRGNQTM FFDGMLIDMM WDLHDWFYKE TLSSVSTSSS SKTASSSSSS STSSSTPPCA VFMFRRRSGL DSRLWIDEDE
301: QESEMKKNIG SRDEKHSFSL IICASKK
101: ILWDLSEAEY ENNGPEPIRR FFVVVVVNSE ITLGVGDVDH ERDTSSSSSW RVSKTERFSG TCWLTTKAQF SDVGRKHEIQ IQCGGGGGGG GEEGYLWKVK
201: SPETMSVYVD KRKVFSVKKL KWNFRGNQTM FFDGMLIDMM WDLHDWFYKE TLSSVSTSSS SKTASSSSSS STSSSTPPCA VFMFRRRSGL DSRLWIDEDE
301: QESEMKKNIG SRDEKHSFSL IICASKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.