Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G378000.1 | |
| TraesCS6B01G415700.2 | |
| TraesCS6D01G362500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27770.1 | TraesCS6A01G378000.1 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6B01G415700.2 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6D01G362500.1 | AT5G43320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G134800.1 | Wheat | plastid | 96.23 | 96.84 |
| TraesCS4A01G183900.1 | Wheat | plastid | 95.91 | 96.83 |
| TraesCS5D01G137700.1 | Wheat | plastid | 66.35 | 65.73 |
| Zm00001d052520_P001 | Maize | plastid | 64.47 | 64.26 |
| Os12t0149000-01 | Rice | plastid | 65.72 | 63.72 |
| OQU82880 | Sorghum | plastid | 65.72 | 63.53 |
| KXG22966 | Sorghum | plastid | 65.09 | 63.3 |
| Zm00001d004919_P001 | Maize | plastid | 63.21 | 62.23 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 36.16 | 38.98 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 35.53 | 38.44 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 35.85 | 37.25 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 34.91 | 36.39 |
| TraesCS7D01G277700.1 | Wheat | plastid | 33.02 | 34.77 |
| PGSC0003DMT400006889 | Potato | nucleus | 16.67 | 34.64 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 31.13 | 34.38 |
| GSMUA_Achr11P... | Banana | plastid | 30.82 | 33.79 |
| TraesCS2D01G290200.1 | Wheat | cytosol | 35.22 | 33.73 |
| VIT_08s0007g03840.t01 | Wine grape | nucleus | 31.76 | 33.55 |
| KRH67854 | Soybean | cytosol | 31.45 | 32.47 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 30.5 | 32.44 |
| CDX79683 | Canola | cytosol | 31.76 | 31.86 |
| CDX84556 | Canola | cytosol | 32.08 | 31.78 |
| Bra023071.1-P | Field mustard | cytosol | 31.76 | 31.46 |
| KRG96144 | Soybean | nucleus | 30.19 | 31.27 |
| AT2G27770.1 | Thale cress | plastid | 30.5 | 30.31 |
| KRH26585 | Soybean | plastid | 28.62 | 30.23 |
| KRH22720 | Soybean | plastid | 28.62 | 30.13 |
| CDX77134 | Canola | cytosol, plastid | 30.5 | 30.03 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 27.04 | 29.25 |
| Bra034367.1-P | Field mustard | plastid | 29.25 | 28.62 |
| CDY30531 | Canola | plastid | 29.25 | 28.35 |
| AT2G36470.1 | Thale cress | nucleus | 28.93 | 28.13 |
| KRH25175 | Soybean | cytosol | 27.99 | 28.08 |
| KRH30504 | Soybean | plastid | 28.62 | 28.0 |
| TraesCS2D01G204300.1 | Wheat | plastid | 24.84 | 27.92 |
| PGSC0003DMT400018411 | Potato | cytosol | 26.42 | 27.72 |
| TraesCS4D01G010300.1 | Wheat | cytosol | 29.56 | 26.78 |
| Solyc11g066930.1.1 | Tomato | nucleus, plastid | 26.73 | 26.65 |
| Solyc06g074500.1.1 | Tomato | cytosol | 25.16 | 26.4 |
| TraesCS1D01G026300.1 | Wheat | cytosol | 24.21 | 25.33 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 22.64 | 23.38 |
| CDY33155 | Canola | cytosol | 28.62 | 22.75 |
| TraesCS6D01G150500.1 | Wheat | nucleus | 22.33 | 22.68 |
| TraesCS3D01G411600.1 | Wheat | plastid | 22.64 | 22.22 |
| TraesCS7D01G147500.1 | Wheat | plastid | 25.16 | 20.36 |
| TraesCS5D01G233300.1 | Wheat | plastid | 24.53 | 18.84 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G129600.1 | EnsemblPlantsGene:TraesCS4D01G129600 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF38 | PFAM:PF05910 |
| SEG:seg | SignalP:SignalP-noTM | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4D:+:115121422..115122378
Molecular Weight (calculated)
33840.1 Da
IEP (calculated)
7.131
GRAVY (calculated)
0.066
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSASSLLLL PSSVRDLASC VVADVAACTT PSSTLTSPAS PSTLSVTVFY RATALLPGQS SPAHLRLTWT RSPLGPTLSF SPSASSPAVV LRRRRGTQSV
101: SVDGAAQPQL VVFWDLTAAR YDASLEPHSG YYFVAVAGAD VVLAVGDLAA EFVEERFEGR IPKAAALTVP FARRERVVAP DPAAMHTARR VRFAEGGPDH
201: EVSVGCSGGG VGGAAEEELW VSVDGKRAVQ ARRPRLNFRG NQTVFVDGAP VDVMWDLHGW WFREPPYGSA VVMLRARSAL ESRLWLEEEE VATAVPGFSL
301: VLQAFKSRAD GLSSAPAH
101: SVDGAAQPQL VVFWDLTAAR YDASLEPHSG YYFVAVAGAD VVLAVGDLAA EFVEERFEGR IPKAAALTVP FARRERVVAP DPAAMHTARR VRFAEGGPDH
201: EVSVGCSGGG VGGAAEEELW VSVDGKRAVQ ARRPRLNFRG NQTVFVDGAP VDVMWDLHGW WFREPPYGSA VVMLRARSAL ESRLWLEEEE VATAVPGFSL
301: VLQAFKSRAD GLSSAPAH
001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
Arabidopsis Description
At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.