Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G378000.1 | |
| TraesCS6B01G415700.2 | |
| TraesCS6D01G362500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27770.1 | TraesCS6A01G378000.1 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6B01G415700.2 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6D01G362500.1 | AT5G43320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G290200.1 | Wheat | cytosol | 95.28 | 97.29 |
| TraesCS2B01G308700.1 | Wheat | cytosol | 95.58 | 96.72 |
| Os04t0407500-00 | Rice | cytosol, plastid | 58.11 | 78.8 |
| Zm00001d025337_P001 | Maize | cytosol | 76.99 | 75.65 |
| Zm00001d003829_P001 | Maize | cytosol, nucleus, peroxisome | 76.11 | 75.0 |
| KXG26216 | Sorghum | cytosol | 79.06 | 71.85 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 39.53 | 45.58 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 40.41 | 44.92 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 39.82 | 44.12 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 37.17 | 42.71 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 35.99 | 42.36 |
| GSMUA_Achr11P... | Banana | plastid | 33.33 | 38.97 |
| TraesCS5A01G130200.1 | Wheat | plastid | 35.69 | 38.41 |
| TraesCS4A01G183900.1 | Wheat | plastid | 33.63 | 36.19 |
| TraesCS7A01G277900.1 | Wheat | plastid | 30.97 | 35.35 |
| VIT_08s0007g03840.t01 | Wine grape | nucleus | 30.97 | 34.88 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 30.68 | 34.78 |
| KRG96144 | Soybean | nucleus | 30.97 | 34.2 |
| TraesCS2A01G196200.1 | Wheat | plastid | 28.02 | 33.57 |
| KRH67854 | Soybean | cytosol | 30.38 | 33.44 |
| KRH26585 | Soybean | plastid | 29.5 | 33.22 |
| KRH22720 | Soybean | plastid | 29.5 | 33.11 |
| TraesCS4A01G302100.1 | Wheat | cytosol | 34.22 | 32.77 |
| TraesCS5A01G456500.1 | Wheat | plastid | 28.02 | 32.53 |
| KRH25175 | Soybean | cytosol | 30.09 | 32.18 |
| CDX79683 | Canola | cytosol | 28.91 | 30.91 |
| CDX84556 | Canola | cytosol | 29.2 | 30.84 |
| Bra023071.1-P | Field mustard | cytosol | 29.2 | 30.84 |
| KRH30504 | Soybean | plastid | 29.5 | 30.77 |
| PGSC0003DMT400018411 | Potato | cytosol | 27.14 | 30.36 |
| PGSC0003DMT400006889 | Potato | nucleus | 13.57 | 30.07 |
| CDX77134 | Canola | cytosol, plastid | 28.32 | 29.72 |
| AT2G27770.1 | Thale cress | plastid | 27.73 | 29.38 |
| AT2G36470.1 | Thale cress | nucleus | 28.32 | 29.36 |
| Solyc06g074500.1.1 | Tomato | cytosol | 25.96 | 29.04 |
| Bra034367.1-P | Field mustard | plastid | 27.14 | 28.31 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 24.48 | 28.23 |
| CDY30531 | Canola | plastid | 27.14 | 28.05 |
| Solyc11g066930.1.1 | Tomato | nucleus, plastid | 25.66 | 27.27 |
| TraesCS3A01G415900.1 | Wheat | plastid | 24.19 | 25.79 |
| TraesCS1A01G026000.1 | Wheat | cytosol | 22.42 | 25.0 |
| CDY33155 | Canola | cytosol | 28.91 | 24.5 |
| TraesCS7A01G146000.1 | Wheat | plastid | 23.89 | 23.75 |
| TraesCS6A01G161700.1 | Wheat | cytosol | 20.35 | 22.04 |
| TraesCS5A01G226100.1 | Wheat | plastid | 25.66 | 21.01 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G292300.1 | EnsemblPlantsGene:TraesCS2A01G292300 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF16 | PFAM:PF05910 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:503454051..503455240
Molecular Weight (calculated)
35918.1 Da
IEP (calculated)
8.397
GRAVY (calculated)
-0.217
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDLVSCFSE HAVRISDVAC SGSAAANAAA AATTGTADGG GRAAGISAVT TVYRSRLSAS GKDLLVDVTW ARSPDGPALS VAVHDAGAPR HRAAAAAAPR
101: HLHRRKGSGT FTAGSCVVGV FWDYAAARYG AGPEPVSGFY VAVVADAEFV LLLGDMSRGY VERLHGGIPV AESRMARRRE RFVGCGCWHT RARFLESGAE
201: HEIGVGLEGD TEAWVTVDGR KVVQLRRLRW NFRGSHTLIL DGGAPVDMTW DLHGWLFHAI DPSASSSSAV FTFHARGASE TRLWMDDDDG AASSSGESDK
301: EHDKPLAPAP ARGQRQKQGP SGQGFCLLIQ GFRRSSKTT
101: HLHRRKGSGT FTAGSCVVGV FWDYAAARYG AGPEPVSGFY VAVVADAEFV LLLGDMSRGY VERLHGGIPV AESRMARRRE RFVGCGCWHT RARFLESGAE
201: HEIGVGLEGD TEAWVTVDGR KVVQLRRLRW NFRGSHTLIL DGGAPVDMTW DLHGWLFHAI DPSASSSSAV FTFHARGASE TRLWMDDDDG AASSSGESDK
301: EHDKPLAPAP ARGQRQKQGP SGQGFCLLIQ GFRRSSKTT
001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
Arabidopsis Description
At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.