Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 2
- plasma membrane 1
- plastid 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0810400-01 | |
| Os02t0810500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27770.1 | Os02t0810400-01 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | Os02t0810500-01 | AT5G43320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G308700.1 | Wheat | cytosol | 80.0 | 59.7 |
| TraesCS2D01G290200.1 | Wheat | cytosol | 79.2 | 59.64 |
| TraesCS2A01G292300.1 | Wheat | cytosol | 78.8 | 58.11 |
| Zm00001d025337_P001 | Maize | cytosol | 75.6 | 54.78 |
| KXG26216 | Sorghum | cytosol | 78.0 | 52.28 |
| Zm00001d003829_P001 | Maize | cytosol, nucleus, peroxisome | 71.6 | 52.03 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 39.2 | 32.13 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 36.8 | 31.29 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 38.0 | 31.05 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 35.6 | 30.9 |
| PGSC0003DMT400006889 | Potato | nucleus | 18.8 | 30.72 |
| GSMUA_Achr11P... | Banana | plastid | 34.0 | 29.31 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 34.4 | 29.15 |
| Os12t0149000-01 | Rice | plastid | 36.4 | 27.74 |
| KRG96144 | Soybean | nucleus | 32.8 | 26.71 |
| VIT_08s0007g03840.t01 | Wine grape | nucleus | 31.6 | 26.25 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 30.8 | 25.75 |
| KRH67854 | Soybean | cytosol | 31.6 | 25.65 |
| KRH22720 | Soybean | plastid | 30.0 | 24.83 |
| KRH26585 | Soybean | plastid | 29.6 | 24.58 |
| Os07t0572300-01 | Rice | plastid | 27.6 | 24.3 |
| CDX84556 | Canola | cytosol | 30.8 | 23.99 |
| Bra023071.1-P | Field mustard | cytosol | 30.8 | 23.99 |
| CDX79683 | Canola | cytosol | 30.4 | 23.97 |
| PGSC0003DMT400018411 | Potato | cytosol | 28.8 | 23.76 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 27.2 | 23.37 |
| KRH25175 | Soybean | cytosol | 29.6 | 23.34 |
| CDX77134 | Canola | cytosol, plastid | 29.6 | 22.91 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 26.8 | 22.79 |
| Os05t0108400-01 | Rice | cytosol | 27.6 | 22.55 |
| KRH30504 | Soybean | plastid | 29.2 | 22.46 |
| Solyc06g074500.1.1 | Tomato | cytosol | 27.2 | 22.44 |
| AT2G27770.1 | Thale cress | plastid | 28.4 | 22.19 |
| Solyc11g066930.1.1 | Tomato | nucleus, plastid | 28.0 | 21.94 |
| Bra034367.1-P | Field mustard | plastid | 28.0 | 21.54 |
| CDY30531 | Canola | plastid | 28.0 | 21.34 |
| AT2G36470.1 | Thale cress | nucleus | 27.2 | 20.8 |
| Os06t0181800-00 | Rice | plastid | 26.8 | 19.09 |
| Os01t0909400-01 | Rice | cytosol, plastid | 23.6 | 18.15 |
| CDY33155 | Canola | cytosol | 28.8 | 18.0 |
| Os02t0198800-01 | Rice | cytosol, nucleus | 26.4 | 17.74 |
| Os08t0439600-00 | Rice | plastid | 28.4 | 17.49 |
| Os09t0416600-02 | Rice | plastid | 28.8 | 16.22 |
| Os02t0695050-00 | Rice | extracellular, golgi, mitochondrion | 8.0 | 7.69 |
Protein Annotations
| EnsemblPlants:Os04t0407500-00 | EnsemblPlantsGene:Os04g0407500 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF16 | PFAM:PF05910 |
| ProteinID:BAS89089.1 | SEG:seg | UniParc:UPI000393A60C | UniProt:A0A0N7KJ07 | MapMan:35.2 | : |
Description
Similar to H0321H01.2 protein. (Os04t0407500-00)
Coordinates
chr4:+:20195358..20196270
Molecular Weight (calculated)
26601.2 Da
IEP (calculated)
7.165
GRAVY (calculated)
-0.224
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: GGGSTDSAPR HLHRRKGSGT FTAGSCVVGV FWDFAAARYA AGPEPVSGYY VAVVADAEFV LLLGDMSRGY VERLHGGIPI AGSRMARRRE RFVGCGCWST
101: RARFLESGAE HDIVVALDGD AEAWVTVDGR KVVQLRRLRW NFRGSHTLFL DGGAPVDMTW DLHGWLFHAA DPSPASSCAA VFTFQTRGAS ETKFWIEDDG
201: DGDDDLEQSQ PPAAPRGPKQ KLGGGGGGGA PSGQGFCLLI QGFRGASKIA
101: RARFLESGAE HDIVVALDGD AEAWVTVDGR KVVQLRRLRW NFRGSHTLFL DGGAPVDMTW DLHGWLFHAA DPSPASSCAA VFTFQTRGAS ETKFWIEDDG
201: DGDDDLEQSQ PPAAPRGPKQ KLGGGGGGGA PSGQGFCLLI QGFRGASKIA
001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
Arabidopsis Description
At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.