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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 28056797
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os07t0171300-01 Rice cytosol, plastid 0.0 0.0
Os01t0744300-01 Rice cytosol, nucleus, plastid 0.0 0.0
Os01t0772600-01 Rice cytosol 0.0 0.0
Os02t0280400-02 Rice cytosol 0.0 0.0
Os02t0622100-01 Rice nucleus 0.0 0.0
Os02t0810400-01 Rice cytosol 0.0 0.0
Os03t0793500-01 Rice cytosol, mitochondrion 0.0 0.0
Os04t0514800-01 Rice cytosol 0.0 0.0
Os05t0200500-02 Rice cytosol 0.0 0.0
Os05t0593800-01 Rice plasma membrane 0.0 0.0
Os01t0570500-01 Rice plasma membrane 0.0 0.0
Os10t0476300-02 Rice plasma membrane 0.0 0.0
Solyc09g090230.1.1 Tomato cytosol, nucleus 0.0 0.0
Solyc09g090240.1.1 Tomato cytosol 0.0 0.0
TraesCS6A01G378000.1 Wheat cytosol 0.0 0.0
TraesCS6B01G415700.2 Wheat cytosol 0.0 0.0
TraesCS6D01G362500.1 Wheat cytosol 0.0 0.0
Zm00001d018440_P002 Maize cytosol 0.0 0.0
Zm00001d051951_P002 Maize cytosol 0.0 0.0
CDY18233 Canola cytosol 0.0 0.0
AT5G43320.1 Thale cress cytosol 0.0 0.0
Bra015317.1-P Field mustard cytosol 0.0 0.0
Bra027483.1-P Field mustard cytosol 0.0 0.0
Bra032511.1-P Field mustard cytosol 0.0 0.0
Bra035974.1-P Field mustard cytosol 0.0 0.0
CDX89823 Canola cytosol 0.0 0.0
CDY10056 Canola cytosol 0.0 0.0
CDY14873 Canola cytosol 0.0 0.0
AT1G04440.1 Thale cress cytosol 0.0 0.0
CDY32954 Canola cytosol 0.0 0.0
CDY43608 Canola cytosol 0.0 0.0
CDY53188 Canola cytosol 0.0 0.0
CDY56353 Canola cytosol 0.0 0.0
CDY69732 Canola cytosol 0.0 0.0
KXG31326 Sorghum cytosol 0.0 0.0
Os01t0198200-01 Rice cytosol, mitochondrion, nucleus, vacuole 0.0 0.0
Os01t0231500-01 Rice cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.8.270MapMan:22.8.2EntrezGene:4331097EMBL:AK071602ProteinID:BAD21587.1ProteinID:BAF10385.1
ProteinID:BAS81513.1GO:GO:0003674GO:GO:0005096GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0006810GO:GO:0006886GO:GO:0008150GO:GO:0009987
GO:GO:0012505GO:GO:0016043GO:GO:0017137GO:GO:0030234GO:GO:0031338GO:GO:0090630
InterPro:IPR000195EnsemblPlantsGene:Os02g0810500EnsemblPlants:Os02t0810500-01PFAM:PF00566PFscan:PS50086PANTHER:PTHR22957
PANTHER:PTHR22957:SF299UniProt:Q6K986InterPro:Rab-GTPase-TBC_domInterPro:Rab-GTPase_TBC_sfSMART:SM00164SUPFAM:SSF47923
UniParc:UPI0000377C4ARefSeq:XP_015625285.1::::
Description
RabGAP/TBC domain containing protein. (Os02t0810500-01)
Coordinates
chr2:+:34654287..34658774
Molecular Weight (calculated)
49044.1 Da
IEP (calculated)
6.413
GRAVY (calculated)
-0.422
Length
427 amino acids
Sequence
(BLAST)
001: MNRMMFMACC YNDPDMLIDP DTVYPIRPEC REDAAKTRFK PRPGLTLSPR RWKLLHNEEG VLDIAGMIKR VQRGGTHPNI KGEVWEFLLG CYDPKSNTEQ
101: KSQLRQQRRL EYEKLKTKCR EMDTAVGSGR VITMPVITED GQPIQDPNSV DAEQQASDTP LPKEVIQWKL TLHQIGLDVN RTDRQLVYYE SQENLARLWD
201: ILAVYSWVDK DIGYCQGMSD LCSPMSILLE HEADAFWCFE RLMRRVRGNF VSSSTSIGVR SQLTILSSVM KAVDPKLHEH LENLDGGEYL FAFRMLMVLF
301: RREFSFVDTM YLWELMWSME YNPGLFSMLE SDNSTSQANT KDENALKQCG KFEQKNLQAA KKEEQIPLSV FIVASVIEAR NKQILTDAKG LDDVVKILND
401: ITGSLDAKKA CRGALKIHER YLTTVKA
Best Arabidopsis Sequence Match ( AT4G27100.1 )
(BLAST)
001: MWGGAGEPAD SYYQVRPECT DVPKTRFKIK PGKTLSVRKW QAVFVQEGSL HIGKTLRRIR RGGIHPSIRG EVWEFLLGCY DPMSTFEERE QIRQRRRLQY
101: ASWKEECKQM FPVIGSGRFT TAPVITENGQ PNYDPLVLQE INLGTNSNGS VFFKELTSRG PLDKKIIQWL LTLHQIGLDV NRTDRALVFY EKKENLSKLW
201: DILSVYAWID NDVGYCQGMS DLCSPMIILL EDEADAFWCF ERLMRRLRGN FRSTGRSVGV EAQLTHLSSI TQVVDPKLHQ HLDKLGGGDY LFAIRMLMVQ
301: FRREFSFCDS LYLWEMMWAL EYDPDLFYVY EAHQCGNEKT EGLKGKPKSI KQCGKYERQN MRNGGKSAEG PLPISVFLVA SVLKDKSYKL MTEARGLDDV
401: VKILNDTTGN LDAKKTCSGA IKIHKRYLRK VISMFL
Arabidopsis Description
Uncharacterized protein At4g27100 [Source:UniProtKB/TrEMBL;Acc:Q8H1R9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.