Skip to main content
crop-pal logo
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 4
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 14535884
gfp PMID: 14535884
W Liu, ZH Xu, D Luo, HW Xue
National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G210400.1 Wheat cytosol 91.14 90.56
TraesCS6B01G256000.1 Wheat cytosol 91.14 90.56
HORVU6Hr1G058230.6 Barley cytosol 91.14 90.56
TraesCS6A01G225600.1 Wheat cytosol 90.71 90.13
Os04t0514800-01 Rice cytosol 81.64 83.26
EES05449 Sorghum cytosol 83.37 83.01
Zm00001d017261_P006 Maize cytosol 84.02 79.39
Zm00001d051135_P005 Maize cytosol 82.29 76.05
VIT_07s0005g03710.t01 Wine grape cytosol 75.16 75.98
PGSC0003DMT400065568 Potato cytosol 74.73 75.71
Solyc06g083830.2.1 Tomato cytosol 74.95 75.6
PGSC0003DMT400051696 Potato cytosol 74.73 75.38
Solyc09g066440.2.1 Tomato cytosol 74.73 75.22
PGSC0003DMT400026692 Potato cytosol 74.3 74.78
GSMUA_Achr3P04680_001 Banana cytosol 75.59 74.47
Solyc06g008320.2.1 Tomato cytosol, nucleus 73.43 74.4
GSMUA_Achr10P... Banana cytosol 74.3 73.82
GSMUA_Achr5P14540_001 Banana cytosol 75.16 73.57
GSMUA_AchrUn_... Banana cytosol 73.43 73.28
Os02t0810400-01 Rice cytosol 72.35 72.51
GSMUA_Achr9P13290_001 Banana cytosol 75.81 70.2
Os10t0476300-02 Rice plasma membrane 68.25 66.53
Os01t0570500-01 Rice plasma membrane 58.32 57.2
Os05t0593800-01 Rice plasma membrane 58.32 57.08
Os02t0280400-02 Rice cytosol 49.68 55.29
Os01t0231500-01 Rice cytosol 50.54 54.42
Os01t0744300-01 Rice cytosol, nucleus, plastid 31.97 24.79
Os05t0200500-02 Rice cytosol 31.75 24.22
Os01t0198200-01 Rice cytosol, mitochondrion, nucleus, vacuole 32.18 23.43
Os01t0772600-01 Rice cytosol 31.32 20.77
Os03t0793500-01 Rice cytosol, mitochondrion 30.67 20.08
Os07t0171300-01 Rice cytosol, plastid 30.24 20.03
Os02t0810500-01 Rice cytosol, plasma membrane 0.0 0.0
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.4.1EntrezGene:4330018EMBL:AJ487966EMBL:AK101388ProteinID:BAD21551.1
ProteinID:BAF09379.1ProteinID:BAS79831.1ProteinID:EEE57397.1GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0004674GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0006468GO:GO:0006810
GO:GO:0006897GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008360
GO:GO:0009409GO:GO:0009628GO:GO:0009653GO:GO:0009719GO:GO:0009741GO:GO:0009826
GO:GO:0009850GO:GO:0009987GO:GO:0016043GO:GO:0016049GO:GO:0016301GO:GO:0016310
GO:GO:0016740GO:GO:0018105GO:GO:0019538GO:GO:0040007GO:GO:0040008GO:GO:0048364
InterPro:IPR000719InterPro:Kinase-like_dom_sfEnsemblPlantsGene:Os02g0622100EnsemblPlants:Os02t0622100-01PFAM:PF00069ScanProsite:PS00107
ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR11909PANTHER:PTHR11909:SF200InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BS
UniProt:Q6K9N1SMART:SM00220SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI0000377C32RefSeq:XP_015626436.1
Description
HYBRID BREAKDOWN 2Casein kinase I, Low temperature tolerance, Root development, Hormone sensitivity (Os02t0622100-01)
Coordinates
chr2:+:24766809..24772750
Molecular Weight (calculated)
52729.9 Da
IEP (calculated)
10.247
GRAVY (calculated)
-0.673
Length
463 amino acids
Sequence
(BLAST)
001: MEHVIGGKFK LGRKIGSGSF GELYLGVNIQ SSEEVAIKLE SVKSRHPQLH YESKLYMLLQ GGTGIPHLKW FGVEGEYNVM VIDLLGPSLE DLFNYCNRKF
101: SLKTVLMLAD QMINRVEYMH TRGFLHRDIK PDNFLMGLGR KASQVYVIDY GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGVEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYDKISE KKMLTPVEVL CKSYPTEFIS YFHYCRSLRF EDKPDYSYLK RLFRDLFIRE GYQLDYIFDW TKQGSESNRL
301: RSSGRTSGLV GPSAERTERA AARQDVPDRF SGTVDPFARR TGSGSGHYGE HTKHRNILDS LLAPKTAVDL DKRRPTSSSR NGSTSRKALL SSSRPSSGDP
401: IDPNRSNLIP TSSGSSRPST MQRLHQSTGL ETRSSLTKTA RNVHDDPTLR TFERLSISAD RRK
Best Arabidopsis Sequence Match ( AT4G28540.1 )
(BLAST)
001: MDLKMDNVIG GKFKLGRKIG GGSFGELFLA VSLQTGEEAA VKLEPAKTKH PQLHYESKIY MLLQGGSGIP SLKWFGVQGD YNAMVIDLLG PSLEDLFNYC
101: NRRLTLKAVL MLADQLISRV EYMHSRGFLH RDIKPDNFLM GLGRKANQVY IIDFGLAKKY RDLQTHRHIP YRENKNLTGT ARYASVNTHL GVEQSRRDDL
201: ESLGYVLMYF LRGSLPWQGL KAGTKKQKYD RISEKKVSTP IEVLCKSYPP EFVSYFQYCR SLRFEDKPDY SYLKRLFRDL FIREGYQFDY VFDWTALKHP
301: QSSARSHSST HERHRTGKPG MGAGPSAEKP ERISVGNIRD KFSGAVEAFA RRNVRGPSPH QNHTRHRTLD EIPSMKPAVN MVSEKGRNTS RYGSASRRAV
401: ASGSRPSSSG EQRESRDSSR VASSGGGVRP SVFQRTQAAA AVSGYESKTA SAFNRDRVAA SRTARDEALR SFELLSIRK
Arabidopsis Description
CKL6Casein kinase 1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.