Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 4
- plasma membrane 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
14535884
|
gfp PMID:
14535884
National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6D01G210400.1 | Wheat | cytosol | 91.14 | 90.56 |
TraesCS6B01G256000.1 | Wheat | cytosol | 91.14 | 90.56 |
HORVU6Hr1G058230.6 | Barley | cytosol | 91.14 | 90.56 |
TraesCS6A01G225600.1 | Wheat | cytosol | 90.71 | 90.13 |
Os04t0514800-01 | Rice | cytosol | 81.64 | 83.26 |
EES05449 | Sorghum | cytosol | 83.37 | 83.01 |
Zm00001d017261_P006 | Maize | cytosol | 84.02 | 79.39 |
Zm00001d051135_P005 | Maize | cytosol | 82.29 | 76.05 |
VIT_07s0005g03710.t01 | Wine grape | cytosol | 75.16 | 75.98 |
PGSC0003DMT400065568 | Potato | cytosol | 74.73 | 75.71 |
Solyc06g083830.2.1 | Tomato | cytosol | 74.95 | 75.6 |
PGSC0003DMT400051696 | Potato | cytosol | 74.73 | 75.38 |
Solyc09g066440.2.1 | Tomato | cytosol | 74.73 | 75.22 |
PGSC0003DMT400026692 | Potato | cytosol | 74.3 | 74.78 |
GSMUA_Achr3P04680_001 | Banana | cytosol | 75.59 | 74.47 |
Solyc06g008320.2.1 | Tomato | cytosol, nucleus | 73.43 | 74.4 |
GSMUA_Achr10P... | Banana | cytosol | 74.3 | 73.82 |
GSMUA_Achr5P14540_001 | Banana | cytosol | 75.16 | 73.57 |
GSMUA_AchrUn_... | Banana | cytosol | 73.43 | 73.28 |
Os02t0810400-01 | Rice | cytosol | 72.35 | 72.51 |
GSMUA_Achr9P13290_001 | Banana | cytosol | 75.81 | 70.2 |
Os10t0476300-02 | Rice | plasma membrane | 68.25 | 66.53 |
Os01t0570500-01 | Rice | plasma membrane | 58.32 | 57.2 |
Os05t0593800-01 | Rice | plasma membrane | 58.32 | 57.08 |
Os02t0280400-02 | Rice | cytosol | 49.68 | 55.29 |
Os01t0231500-01 | Rice | cytosol | 50.54 | 54.42 |
Os01t0744300-01 | Rice | cytosol, nucleus, plastid | 31.97 | 24.79 |
Os05t0200500-02 | Rice | cytosol | 31.75 | 24.22 |
Os01t0198200-01 | Rice | cytosol, mitochondrion, nucleus, vacuole | 32.18 | 23.43 |
Os01t0772600-01 | Rice | cytosol | 31.32 | 20.77 |
Os03t0793500-01 | Rice | cytosol, mitochondrion | 30.67 | 20.08 |
Os07t0171300-01 | Rice | cytosol, plastid | 30.24 | 20.03 |
Os02t0810500-01 | Rice | cytosol, plasma membrane | 0.0 | 0.0 |
Protein Annotations
Description
HYBRID BREAKDOWN 2Casein kinase I, Low temperature tolerance, Root development, Hormone sensitivity (Os02t0622100-01)
Coordinates
chr2:+:24766809..24772750
Molecular Weight (calculated)
52729.9 Da
IEP (calculated)
10.247
GRAVY (calculated)
-0.673
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHVIGGKFK LGRKIGSGSF GELYLGVNIQ SSEEVAIKLE SVKSRHPQLH YESKLYMLLQ GGTGIPHLKW FGVEGEYNVM VIDLLGPSLE DLFNYCNRKF
101: SLKTVLMLAD QMINRVEYMH TRGFLHRDIK PDNFLMGLGR KASQVYVIDY GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGVEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYDKISE KKMLTPVEVL CKSYPTEFIS YFHYCRSLRF EDKPDYSYLK RLFRDLFIRE GYQLDYIFDW TKQGSESNRL
301: RSSGRTSGLV GPSAERTERA AARQDVPDRF SGTVDPFARR TGSGSGHYGE HTKHRNILDS LLAPKTAVDL DKRRPTSSSR NGSTSRKALL SSSRPSSGDP
401: IDPNRSNLIP TSSGSSRPST MQRLHQSTGL ETRSSLTKTA RNVHDDPTLR TFERLSISAD RRK
101: SLKTVLMLAD QMINRVEYMH TRGFLHRDIK PDNFLMGLGR KASQVYVIDY GLAKKYRDLQ THKHIPYREN KNLTGTARYA SVNTHLGVEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYDKISE KKMLTPVEVL CKSYPTEFIS YFHYCRSLRF EDKPDYSYLK RLFRDLFIRE GYQLDYIFDW TKQGSESNRL
301: RSSGRTSGLV GPSAERTERA AARQDVPDRF SGTVDPFARR TGSGSGHYGE HTKHRNILDS LLAPKTAVDL DKRRPTSSSR NGSTSRKALL SSSRPSSGDP
401: IDPNRSNLIP TSSGSSRPST MQRLHQSTGL ETRSSLTKTA RNVHDDPTLR TFERLSISAD RRK
001: MDLKMDNVIG GKFKLGRKIG GGSFGELFLA VSLQTGEEAA VKLEPAKTKH PQLHYESKIY MLLQGGSGIP SLKWFGVQGD YNAMVIDLLG PSLEDLFNYC
101: NRRLTLKAVL MLADQLISRV EYMHSRGFLH RDIKPDNFLM GLGRKANQVY IIDFGLAKKY RDLQTHRHIP YRENKNLTGT ARYASVNTHL GVEQSRRDDL
201: ESLGYVLMYF LRGSLPWQGL KAGTKKQKYD RISEKKVSTP IEVLCKSYPP EFVSYFQYCR SLRFEDKPDY SYLKRLFRDL FIREGYQFDY VFDWTALKHP
301: QSSARSHSST HERHRTGKPG MGAGPSAEKP ERISVGNIRD KFSGAVEAFA RRNVRGPSPH QNHTRHRTLD EIPSMKPAVN MVSEKGRNTS RYGSASRRAV
401: ASGSRPSSSG EQRESRDSSR VASSGGGVRP SVFQRTQAAA AVSGYESKTA SAFNRDRVAA SRTARDEALR SFELLSIRK
101: NRRLTLKAVL MLADQLISRV EYMHSRGFLH RDIKPDNFLM GLGRKANQVY IIDFGLAKKY RDLQTHRHIP YRENKNLTGT ARYASVNTHL GVEQSRRDDL
201: ESLGYVLMYF LRGSLPWQGL KAGTKKQKYD RISEKKVSTP IEVLCKSYPP EFVSYFQYCR SLRFEDKPDY SYLKRLFRDL FIREGYQFDY VFDWTALKHP
301: QSSARSHSST HERHRTGKPG MGAGPSAEKP ERISVGNIRD KFSGAVEAFA RRNVRGPSPH QNHTRHRTLD EIPSMKPAVN MVSEKGRNTS RYGSASRRAV
401: ASGSRPSSSG EQRESRDSSR VASSGGGVRP SVFQRTQAAA AVSGYESKTA SAFNRDRVAA SRTARDEALR SFELLSIRK
Arabidopsis Description
CKL6Casein kinase 1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.