Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 1
- plastid 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g097830.2.1 | Tomato | cytosol, nucleus, peroxisome | 97.41 | 97.69 |
| VIT_14s0030g01700.t01 | Wine grape | plastid | 63.69 | 67.79 |
| KRG96948 | Soybean | plastid | 55.62 | 61.86 |
| KRH68709 | Soybean | plastid | 53.89 | 61.31 |
| KRH34068 | Soybean | plastid | 56.2 | 58.91 |
| KRG92733 | Soybean | plastid | 55.62 | 58.31 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 27.95 | 32.01 |
| PGSC0003DMT400057872 | Potato | cytosol | 26.51 | 30.77 |
| PGSC0003DMT400068894 | Potato | plastid | 29.11 | 28.94 |
| PGSC0003DMT400046694 | Potato | cytosol | 25.94 | 28.21 |
| PGSC0003DMT400069001 | Potato | plastid | 24.5 | 27.6 |
| PGSC0003DMT400006889 | Potato | nucleus | 12.1 | 27.45 |
| PGSC0003DMT400006698 | Potato | mitochondrion | 23.92 | 26.95 |
| PGSC0003DMT400076600 | Potato | cytosol | 22.19 | 25.84 |
| PGSC0003DMT400018411 | Potato | cytosol | 22.48 | 25.74 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400089872 | EnsemblPlantsGene:PGSC0003DMG400039443 | EntrezGene:102599154 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF6 |
| PFAM:PF05910 | PGSC:PGSC0003DMG400039443 | RefSeq:XP_006347797.1 | SEG:seg | UniParc:UPI0002960BC9 | UniProt:M1DJ39 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400039443]
Coordinates
chr1:-:75491590..75492633
Molecular Weight (calculated)
38737.5 Da
IEP (calculated)
8.888
GRAVY (calculated)
-0.198
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNMIPACFN IPHNSEDSET SSLPPPSQVP QNLVTCIYQA QICGSPVYLT LTWSKNLFSH SLLVHAPDLF SITIPLHQSS FAIFKARPGS KSVHPVQLHD
101: RKKMKVHWDF TLAKFNQNSA EPEGCFYIAI TCNARLEFFL GDMLTELTGR ARLVSGCCTG DLTLLSRREH VFGRRSYTTR ARIMGVKHEF VIECGGGVLK
201: VKVDGKTSLV VKRLAWKFRG NERILVGQVE VTFFWDVFNW VNKNCDNHKF GHGHGHEHGV FVFQVGDGGV WPEMGGAEKK LMRKSLSATA GTMSTPLSVS
301: LSPSPSCSSV LQWAEENSEC GRSSWSSIRS YGSNEGFSLL LYAWRKD
101: RKKMKVHWDF TLAKFNQNSA EPEGCFYIAI TCNARLEFFL GDMLTELTGR ARLVSGCCTG DLTLLSRREH VFGRRSYTTR ARIMGVKHEF VIECGGGVLK
201: VKVDGKTSLV VKRLAWKFRG NERILVGQVE VTFFWDVFNW VNKNCDNHKF GHGHGHEHGV FVFQVGDGGV WPEMGGAEKK LMRKSLSATA GTMSTPLSVS
301: LSPSPSCSSV LQWAEENSEC GRSSWSSIRS YGSNEGFSLL LYAWRKD
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.