Factsheet for Zm00001d050436_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13906	Sorghum	plastid	91.67	89.47
Zm00001d032164_P001	Maize	plastid	85.54	86.39
Os08t0439600-00	Rice	plastid	76.72	77.09
Zm00001d020470_P001	Maize	plastid	66.91	64.85
Zm00001d005752_P001	Maize	plastid	63.48	61.52
GSMUA_Achr9P13220_001	Banana	mitochondrion, peroxisome, plastid	48.77	52.37
GSMUA_Achr3P04550_001	Banana	plastid	33.58	51.5
GSMUA_Achr5P22830_001	Banana	cytosol, nucleus, peroxisome	47.06	49.36
GSMUA_Achr10P...	Banana	cytosol, golgi, plastid	46.08	46.19
Os02t0695050-00	Rice	extracellular, golgi, mitochondrion	28.43	44.62
Solyc08g028780.1.1	Tomato	mitochondrion	35.05	42.18
PGSC0003DMT400068894	Potato	plastid	35.78	41.83
Zm00001d045119_P001	Maize	plastid	35.29	41.03
KRH52365	Soybean	plastid	32.35	39.64
CDY51100	Canola	cytosol	31.86	38.24
VIT_04s0008g05970.t01	Wine grape	plastid	34.56	38.01
CDX85733	Canola	cytosol, nucleus, plastid	31.62	37.61
KRH61697	Soybean	plastid	28.43	37.3
CDX69793	Canola	nucleus	34.31	37.23
Bra028555.1-P	Field mustard	nucleus	30.88	36.73
CDX97072	Canola	nucleus	34.8	36.69
Bra008998.1-P	Field mustard	nucleus, peroxisome, plastid	34.8	36.6
KRH15788	Soybean	plastid	30.64	36.55
KRH05263	Soybean	mitochondrion, plastid	30.39	36.47
AT5G11000.1	Thale cress	cytosol, plastid	34.07	35.73
Zm00001d015796_P001	Maize	cytosol	16.42	34.9
AT2G25200.1	Thale cress	plastid	27.7	31.92
CDX76763	Canola	plastid	27.21	31.81
CDY56275	Canola	cytosol	11.76	31.37
Zm00001d034527_P001	Maize	plastid	22.55	31.29
Zm00001d013042_P001	Maize	plastid	22.3	31.27
Bra007811.1-P	Field mustard	plastid	26.47	30.86
Zm00001d053654_P001	Maize	plastid	22.3	30.74
Zm00001d042425_P001	Maize	plastid	22.06	28.94
Zm00001d021869_P001	Maize	plastid	20.1	28.87
Zm00001d035694_P001	Maize	cytosol	20.83	27.96
Zm00001d052520_P001	Maize	plastid	21.08	26.96
Zm00001d004919_P001	Maize	plastid	21.32	26.93
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	22.55	26.74
Zm00001d025337_P001	Maize	cytosol	22.55	26.67
Zm00001d037575_P001	Maize	cytosol	15.69	26.56
Zm00001d031962_P001	Maize	plastid	19.12	24.68

Protein Annotations

EMBL:BT037710	EnsemblPlants:Zm00001d050436_P001	EnsemblPlants:Zm00001d050436_T001	EnsemblPlantsGene:Zm00001d050436	EntrezGene:100216973	InterPro:DUF868_pln
PANTHER:PTHR31972	PANTHER:PTHR31972:SF14	PFAM:PF05910	ProteinID:AQK52526.1	SEG:seg	UniParc:UPI00017B6A04
UniProt:B4FKS2	MapMan:35.2	:	:	:	:

Description

DUF868 family protein

Coordinates

chr4:-:88042697..88043923

Molecular Weight (calculated)

44168.7 Da

IEP (calculated)

10.740

GRAVY (calculated)

-0.473

Length

408 amino acids

Sequence
(BLAST)

001: MPSRIAACFR CAAAPSSGAG AGAAGPSLAT SIYETHLGLV ALSWSRTSLG LSLRAVLRLS ATPPPGSSSS ASGAGYLDDD ADEEILAFRV SPWLFWRRRG
101: SRRFRAGDRL VDLAWDLSRA RFPVSGSPEP SSGFFVAVVV CGEMVLAAGD LTDLAYRRTR ARRPSGPRPV LLSRREHVSL RDAGAGRGRS HTTWVNVQGK
201: EREISVDLVA RGRGRDKATA GKGKEKDRAD VGMSVSVDGE RVLHVRRLRW KFRGSERVDL GGGDGVQVSW DLHNWLFPPR EPPPTEASTH AHAVFVFRFE
301: LASGGEESEA DLGKNPSPSK DARRNTGVWG GYLARWGQRD WSETGSNGER RKGRGRRLAK ESSSSSASVA SSTASWASGS TVMDWASPEE VEMQRGDGFS
401: LLIYAWKS

Best Arabidopsis Sequence Match ( AT5G11000.1 )
(BLAST)

001: MSPSWLRPTA DHNHPPPQPP SQSPSPLSSG DPNLTTCLYQ TDHGVFYLTW SRTFLGGHSV NLFLHSQDYY NHSSPLSFSS ADLSLSSAVS FHLNLNTLAF
101: WKKRGSRFVS PKIQVFWDLS KAKFDSGSEP RSGFYIAVVV DGEMGLLVGD SVKEAYARAK SAKPPTNPQA LLLRKEHVFG ARVFTTKARF GGKNREISID
201: CRVDEDAKLC FSVDSKQVLQ IKRLRWKFRG NEKVEIDGVH VQISWDVYNW LFQSKSSGDG GGGGGHAVFM FRFESDPEAE EVCETKRKEE EDEKNRNGIV
301: LWKPKKQCGN SFGIKGIVEW RKMRKRFVKS KRSSSSSSIS MSSASSACSS SVMEWASSAD EAEYGGGGCS GSGSGNGLGF SLLVYAWIK

Arabidopsis Description

AT5g11000/T30N20_270 [Source:UniProtKB/TrEMBL;Acc:Q9LEU1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.