Factsheet for VIT_09s0002g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g01360.t01
VIT_14s0030g01760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72710.1	VIT_06s0061g01360.t01	AT2G27770.1	21798944
AT4G26100.1	VIT_14s0030g01760.t01	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P32290_001	Banana	cytosol	29.51	94.56
VIT_11s0016g01950.t01	Wine grape	cytosol	85.56	85.02
Solyc03g121820.2.1	Tomato	cytosol, nucleus	83.01	83.19
PGSC0003DMT400006625	Potato	cytosol	83.01	83.01
EES01354	Sorghum	cytosol	82.17	82.34
Solyc06g062790.2.1	Tomato	cytosol, nucleus	81.1	81.8
PGSC0003DMT400012385	Potato	cytosol	80.47	81.16
HORVU3Hr1G066800.6	Barley	cytosol	81.53	81.01
Bra035646.1-P	Field mustard	cytosol	61.36	80.28
AT1G72710.1	Thale cress	cytosol	78.56	79.57
TraesCS3B01G281100.2	Wheat	cytosol	79.83	79.49
TraesCS3A01G251600.2	Wheat	cytosol	79.83	79.49
TraesCS3D01G252000.2	Wheat	cytosol	79.83	79.49
CDX96430	Canola	cytosol	77.92	78.92
Bra016039.1-P	Field mustard	cytosol	77.92	78.92
CDY49859	Canola	cytosol	77.07	78.06
Bra008043.1-P	Field mustard	cytosol	76.65	77.63
CDX72938	Canola	cytosol	77.71	77.38
CDY11892	Canola	cytosol	70.49	77.21
CDY54387	Canola	cytosol	70.91	77.14
CDY53866	Canola	cytosol	73.04	77.13
CDX88601	Canola	cytosol	70.28	76.98
CDY38255	Canola	cytosol	70.28	76.98
Bra006839.1-P	Field mustard	cytosol	70.28	76.98
Bra002771.1-P	Field mustard	cytosol	70.7	76.91
AT4G26100.1	Thale cress	cytosol	73.46	76.89
AT5G57015.1	Thale cress	cytosol	70.7	76.55
Bra013949.1-P	Field mustard	cytosol	73.67	75.43
CDY20695	Canola	cytosol	66.88	75.36
CDX94377	Canola	cytosol	73.46	75.22
CDY32908	Canola	cytosol	66.88	75.18
Zm00001d011696_P002	Maize	cytosol	69.85	74.27
Zm00001d043693_P002	Maize	cytosol	69.0	70.04
CDY69293	Canola	cytosol	51.17	69.25
VIT_07s0005g03710.t01	Wine grape	cytosol	62.0	63.76
VIT_05s0049g01240.t01	Wine grape	cytosol	62.0	62.93
VIT_11s0016g03460.t01	Wine grape	cytosol	55.41	60.28
VIT_19s0085g00700.t01	Wine grape	cytosol	9.77	38.02
CDX82685	Canola	cytosol, nucleus, vacuole	23.99	36.33
VIT_04s0008g00160.t01	Wine grape	cytosol	33.76	22.88
VIT_09s0002g03680.t01	Wine grape	cytosol	33.33	22.3
VIT_08s0007g07420.t01	Wine grape	cytosol	32.7	21.72
VIT_11s0016g04060.t01	Wine grape	cytosol	32.06	21.57
VIT_06s0004g01090.t01	Wine grape	nucleus	32.06	21.15

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100244694	wikigene:100244694	MapMan:18.4.4.1	ProteinID:CBI35912	ProteinID:CBI35912.3
UniProt:D7TZW6	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740
GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100244694	wikigene:LOC100244694
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF298
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC52201
UniParc:UPI00015C8873	ArrayExpress:VIT_09s0002g01740	EnsemblPlantsGene:VIT_09s0002g01740	EnsemblPlants:VIT_09s0002g01740.t01	unigene:Vvi.7064	RefSeq:XP_002277513
RefSeq:XP_002277513.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:1560578..1567057

Molecular Weight (calculated)

52691.5 Da

IEP (calculated)

10.195

GRAVY (calculated)

-0.597

Length

471 amino acids

Sequence
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKILQ GGTGIPNVKW FGVEGDYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRVEFVH SKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSS THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYEKISE KKVSTSIEAL CRGYPTEFAS YFHYCRSLRF DDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQI
301: SGPPSRALGP GAGPSHGIPP AVANMDRQSG GEDGRPSGWS SADPSRRRTT VPALNLGSLK QKSPVANDST MAKDSLSANV RASGSSRRGA VSSSRDAVIV
401: GGESDPSRSR ADASPGALRK ISSGQRGSPV HSSEHKRISS GRNTSSNIKN FESTLKGIES LHFNNEERVQ Y

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.