Factsheet for Solyc06g062790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097790.2.1
Solyc06g074500.1.1
Solyc11g066930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72710.1	Solyc06g074500.1.1	AT2G27770.1	21798944
AT1G72710.1	Solyc11g066930.1.1	AT2G27770.1	21798944
AT4G26100.1	Solyc01g097790.2.1	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012385	Potato	cytosol	97.0	97.0
KRH12421	Soybean	cytosol	32.76	91.62
GSMUA_Achr3P32290_001	Banana	cytosol	28.05	89.12
Solyc03g121820.2.1	Tomato	cytosol, nucleus	86.51	85.96
VIT_09s0002g01740.t01	Wine grape	cytosol	81.8	81.1
Bra035646.1-P	Field mustard	cytosol	60.17	78.06
KRH23272	Soybean	cytosol	77.73	76.91
KRH10045	Soybean	nucleus	77.52	76.86
Bra016039.1-P	Field mustard	cytosol	76.23	76.56
CDX96430	Canola	cytosol	76.23	76.56
KRH02686	Soybean	nucleus	74.3	76.43
KRH19210	Soybean	nucleus	74.3	76.43
CDY49859	Canola	cytosol	75.59	75.91
AT1G72710.1	Thale cress	cytosol	75.37	75.7
Bra008043.1-P	Field mustard	cytosol	75.16	75.48
AT5G57015.1	Thale cress	cytosol	70.24	75.4
CDX88601	Canola	cytosol	69.38	75.35
Bra006839.1-P	Field mustard	cytosol	69.38	75.35
CDY53866	Canola	cytosol	71.95	75.34
KRH44105	Soybean	cytosol	76.66	75.21
CDY11892	Canola	cytosol	69.16	75.12
EES01354	Sorghum	cytosol	75.59	75.11
CDX72938	Canola	cytosol	76.02	75.05
KRH37421	Soybean	nucleus	73.23	75.0
CDY54387	Canola	cytosol	69.38	74.83
CDY38255	Canola	cytosol	68.74	74.65
Bra002771.1-P	Field mustard	cytosol	69.16	74.6
HORVU3Hr1G066800.6	Barley	cytosol	75.59	74.47
Solyc07g040720.2.1	Tomato	nucleus	75.16	74.36
TraesCS3B01G281100.2	Wheat	cytosol	74.73	73.78
TraesCS3D01G252000.2	Wheat	cytosol	74.73	73.78
Solyc05g016410.2.1	Tomato	cytosol, nucleus	74.09	73.77
CDX94377	Canola	cytosol	72.59	73.7
CDY20695	Canola	cytosol	65.95	73.68
TraesCS3A01G251600.2	Wheat	cytosol	74.52	73.57
CDY32908	Canola	cytosol	65.95	73.51
Bra013949.1-P	Field mustard	cytosol	72.38	73.48
AT4G26100.1	Thale cress	cytosol	70.66	73.33
KRH47076	Soybean	cytosol	58.24	72.15
Solyc09g090230.1.1	Tomato	cytosol, nucleus	17.13	68.97
CDY69293	Canola	cytosol	50.75	68.1
Zm00001d011696_P002	Maize	cytosol	63.81	67.27
Solyc12g007280.1.1	Tomato	cytosol	51.61	64.27
Zm00001d043693_P002	Maize	cytosol	62.95	63.36
KRH12422	Soybean	cytosol, nucleus	38.54	62.5
Solyc08g066870.2.1	Tomato	cytosol, nucleus	50.54	61.78
Solyc09g066440.2.1	Tomato	cytosol	59.96	60.87
Solyc06g008320.2.1	Tomato	cytosol, nucleus	59.31	60.61
Solyc06g053560.2.1	Tomato	cytosol	56.96	60.18
Solyc06g083830.2.1	Tomato	cytosol	58.67	59.7
Solyc09g090250.2.1	Tomato	nucleus	58.03	58.41
Solyc09g090240.1.1	Tomato	cytosol	23.55	56.41
CDX82685	Canola	cytosol, nucleus, vacuole	24.41	36.66
Solyc08g066410.1.1	Tomato	cytosol	19.06	25.8
Solyc12g100310.1.1	Tomato	nucleus	28.91	22.43
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	31.48	21.24
Solyc12g095830.1.1	Tomato	nucleus	31.26	20.71
Solyc10g080700.1.1	Tomato	nucleus	31.26	20.59
Solyc01g006120.2.1	Tomato	nucleus	29.76	20.38
Solyc08g066400.1.1	Tomato	cytosol	10.71	15.02

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740
GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4C710	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF298	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc06g062790.2	EnsemblPlants:Solyc06g062790.2.1
UniParc:UPI0002766958	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:39612815..39619538

Molecular Weight (calculated)

52291.3 Da

IEP (calculated)

10.270

GRAVY (calculated)

-0.543

Length

467 amino acids

Sequence
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGGNVQ TNEEVAIKLE NVKTKHPQLL YEAKLYKILQ GGTGVPNLKW FGVEGDYNVL VMDLLGPSLE DLFNFCNRKM
101: SLKTVLMLAD QMINRVEFVH AKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSS THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: FVLMYFLRGS LPWQGLKAGN KKQKYERISE KKVSTSIETL CRGYPAEFAS YFHYCRSLRF DDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: ANIPSRALGG TAGPSSGTPH GLANVEKKSG GEEGRPTGWS SSNLTRNRST GLNFNAGSLL KQKGTVANDL SVGKELPSSN FFRSSGSARQ PNVSSSRDPV
401: ITGGEPDLSR PQTLDAAGAA SLRKIFNTTQ KTSPVVSSEH KRSSSTRNTN LKNLESAIKG IEGLSFR

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.