Factsheet for Solyc12g007280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
nucleus 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001003	Potato	cytosol	99.2	87.94
VIT_11s0016g03460.t01	Wine grape	cytosol	84.27	72.98
Solyc08g066870.2.1	Tomato	cytosol, nucleus	73.87	72.51
GSMUA_Achr7P14470_001	Banana	cytosol	82.13	71.13
KRH60238	Soybean	cytosol	81.33	70.93
KRH41527	Soybean	nucleus	80.8	70.47
KRH39332	Soybean	cytosol	80.0	70.42
KRH76321	Soybean	cytosol	80.27	69.68
GSMUA_Achr8P19730_001	Banana	cytosol	54.93	69.13
GSMUA_Achr2P19240_001	Banana	cytosol	79.73	68.89
AT4G28860.1	Thale cress	cytosol	76.0	68.84
AT4G28880.1	Thale cress	cytosol	75.73	68.43
TraesCS6B01G218400.1	Wheat	cytosol	73.07	67.82
CDY50929	Canola	cytosol	76.0	67.7
CDX92899	Canola	cytosol	76.0	67.7
CDY06860	Canola	cytosol	75.2	67.63
TraesCS6D01G174800.2	Wheat	cytosol	73.33	67.07
TraesCS6A01G196400.2	Wheat	cytosol	73.33	67.07
Os02t0280400-02	Rice	cytosol	74.4	67.07
Bra011067.1-P	Field mustard	cytosol	74.4	66.91
CDY35229	Canola	cytosol	73.87	66.43
Zm00001d039296_P005	Maize	cytosol	71.2	64.96
TraesCS3D01G162900.1	Wheat	cytosol	69.87	64.85
TraesCS3B01G181900.3	Wheat	cytosol	69.87	64.85
KXG30048	Sorghum	cytosol	72.27	64.68
TraesCS3A01G155400.4	Wheat	cytosol	69.6	64.6
Os01t0231500-01	Rice	cytosol	73.07	63.72
Bra024179.1-P	Field mustard	cytosol, plastid	72.53	63.55
Zm00001d053316_P013	Maize	cytosol	72.0	63.38
KXG31490	Sorghum	cytosol	70.67	61.48
HORVU0Hr1G016190.11	Barley	cytosol	64.27	61.48
Solyc09g090230.1.1	Tomato	cytosol, nucleus	18.13	58.62
Solyc06g053560.2.1	Tomato	cytosol	65.6	55.66
HORVU3Hr1G031560.1	Barley	cytosol, plastid	69.6	54.83
Solyc06g008320.2.1	Tomato	cytosol, nucleus	64.53	52.95
Solyc05g016410.2.1	Tomato	cytosol, nucleus	66.13	52.88
Solyc09g066440.2.1	Tomato	cytosol	64.8	52.83
Solyc06g083830.2.1	Tomato	cytosol	63.73	52.07
Solyc09g090250.2.1	Tomato	nucleus	64.27	51.94
Solyc07g040720.2.1	Tomato	nucleus	65.33	51.91
Solyc06g062790.2.1	Tomato	cytosol, nucleus	64.27	51.61
Solyc03g121820.2.1	Tomato	cytosol, nucleus	64.53	51.49
Solyc09g090240.1.1	Tomato	cytosol	24.53	47.18
Solyc08g066410.1.1	Tomato	cytosol	22.67	24.64
Solyc12g100310.1.1	Tomato	nucleus	30.93	19.27
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	32.8	17.77
Solyc01g006120.2.1	Tomato	nucleus	32.27	17.74
Solyc12g095830.1.1	Tomato	nucleus	33.33	17.73
Solyc10g080700.1.1	Tomato	nucleus	32.27	17.07
Solyc08g066400.1.1	Tomato	cytosol	6.93	7.81

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043
GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4DBR5
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF97	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc12g007280.1	EnsemblPlants:Solyc12g007280.1.1	UniParc:UPI00027693F5	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:1688953..1693741

Molecular Weight (calculated)

43003.7 Da

IEP (calculated)

9.898

GRAVY (calculated)

-0.502

Length

375 amino acids

Sequence
(BLAST)

001: MDRIVGGKFK LGRKIGSGSF GEIFLATHID SFEIVAVKIE NNKTKHPQLL YEAKLYNILQ GGSGVPHIKW SGVDGDDNVL VMDLLGPSLE DLFVYCDRKL
101: SLKTVLMLAD QMITRIEYVH SKGFLHRDIK PDNFLMGLGR KANQVYIIDF GLAKRYRDAT TNRHIPYREN KNLTGTARYA SCNTHLGIEQ SRRDDLESLG
201: YVLLYFLRGS LPWQGLKAAT KKQKYDKICQ KKLSTPIEVL CKSHPVEFAS YFHYCHSLTF DQRPDYGFLK RLFRELFTRQ GYEFDYIFDW TILKYQQAQT
301: SKPQHRQVGG ESSRAIPMDV EKRQVSTGNN GPYVAEVTDR LRPNNPSSPG IRMQFKSPTN RNLTSANLER NVSIK

Best Arabidopsis Sequence Match ( AT4G28860.2 )
(BLAST)

001: MERIIGGKYK LGRKIGGGSF GEIFLATHID TFEIVAVKIE NSKTKHPQLL YEAKLYRTLE GGSGIPRIRW FGVDGTENAL VMDLLGPSLE DLFVYCGRKF
101: SPKTVLMLAD QMLTRIEYVH SKGYLHRDIK PDNFLMGLGR KANQVYLIDF GLAKRYRDAN TNRHIPYREN KNLTGTARYA SCNTHLGIEQ GRRDDLESLG
201: YVLLYFLRGS LPWQGLKAVD KKQKYDKICE KKISTPIEVL CKSHPVEFAS YFHYCHTLTF DQRPDYGFLK RLFRDLFSRE GYEFDYIYDW TIIKYQQSQK
301: TRSQSQAVPG SSNARAIPMD TSNHRGGTKI SHEAQVSDRV RPANASGPSP QINTAVGRSL GFDQVHKNVR AYSFASSK

Arabidopsis Description

CKL4Casein kinase 1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.