Factsheet for Solyc01g006120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081865	Potato	cytosol	87.98	97.72
Solyc12g100310.1.1	Tomato	nucleus	76.83	87.04
GSMUA_Achr11P...	Banana	cytosol	73.75	83.83
CDY23629	Canola	cytosol	63.78	82.86
CDY55141	Canola	cytosol	73.75	79.59
KRH01814	Soybean	nucleus	77.71	78.87
KRH46874	Soybean	nucleus	77.42	78.57
CDX97505	Canola	mitochondrion	74.93	78.25
CDX75726	Canola	mitochondrion	74.63	78.07
TraesCS5A01G000600.2	Wheat	cytosol	67.74	77.39
TraesCS5B01G000400.2	Wheat	cytosol	67.74	77.39
CDX82524	Canola	mitochondrion	74.19	77.37
TraesCS5D01G000900.1	Wheat	cytosol	67.6	77.22
Zm00001d041186_P002	Maize	nucleus	67.01	76.29
OQU79738	Sorghum	nucleus	68.18	75.36
GSMUA_Achr8P16690_001	Banana	endoplasmic reticulum, plasma membrane	74.05	75.15
HORVU5Hr1G000060.5	Barley	cytosol	65.54	75.13
Bra001518.1-P	Field mustard	cytosol	75.07	74.96
Bra021498.1-P	Field mustard	cytosol	75.07	74.96
KRG93028	Soybean	cytosol	73.46	74.89
CDY51730	Canola	cytosol	75.07	74.85
KRH36274	Soybean	nucleus	73.61	74.7
GSMUA_Achr6P11480_001	Banana	plastid	76.83	74.64
Bra027409.1-P	Field mustard	cytosol, plastid	75.37	74.6
VIT_06s0004g01090.t01	Wine grape	nucleus	77.57	74.09
AT3G13670.1	Thale cress	cytosol	75.81	73.54
Solyc12g095830.1.1	Tomato	nucleus	70.82	68.51
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	68.77	67.77
Solyc10g080700.1.1	Tomato	nucleus	67.6	65.02
Solyc08g066400.1.1	Tomato	cytosol	30.06	61.56
Solyc08g066410.1.1	Tomato	cytosol	28.15	55.65
Solyc09g090230.1.1	Tomato	cytosol, nucleus	6.16	36.21
Solyc06g053560.2.1	Tomato	cytosol	21.7	33.48
Solyc09g066440.2.1	Tomato	cytosol	21.85	32.39
Solyc12g007280.1.1	Tomato	cytosol	17.74	32.27
Solyc06g008320.2.1	Tomato	cytosol, nucleus	21.55	32.17
Solyc06g083830.2.1	Tomato	cytosol	21.41	31.81
Solyc09g090250.2.1	Tomato	nucleus	21.11	31.03
Solyc05g016410.2.1	Tomato	cytosol, nucleus	20.82	30.28
Solyc06g062790.2.1	Tomato	cytosol, nucleus	20.38	29.76
Solyc07g040720.2.1	Tomato	nucleus	20.53	29.66
Solyc03g121820.2.1	Tomato	cytosol, nucleus	20.38	29.57
Solyc08g066870.2.1	Tomato	cytosol, nucleus	16.42	29.32
Solyc09g090240.1.1	Tomato	cytosol	8.21	28.72

Protein Annotations

Gene3D:1.10.510.10	MapMan:12.3.6.2	MapMan:18.4.4.2	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043
GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4ASH8
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF207	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc01g006120.2	EnsemblPlants:Solyc01g006120.2.1	UniParc:UPI0002761ECB	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:776048..784378

Molecular Weight (calculated)

76197.7 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.515

Length

682 amino acids

Sequence
(BLAST)

001: MPELRSGVCR RRAPPPVVET KPETKKRVGG GGVGGRSYIK TRAAKAKAAE AEAKLVEVEE EEVKENENER VEGEEVEEEH KMGDESGGLS ANNKVTAQED
101: ESTSLFPDQV QVGGSPVYKV ERKLGKGGFG QVFLGRRLTG GNERASGPLA LEVALKFEHR NSKGCSYGPP YEWQVYNTLG GSHGVPRVHY KGRAGEYYVM
201: VMDMLGPSLW DVWNSSGQSM SAEMVACIAV ESLSILEKLH AKGYVHGDVK PENFLLGQPS TPQEKKLFLV DLGLATKWKD TSKGQHVGYD QRPDTFRGTV
301: RYASAHAHLG RTASRRDDLE SLAYTLIFLH RGRLPWQGYQ GDNKSFLVCK KKMATSPEML CCFCPAPFRE FLDTVINMKF DEEPKYSKLI SLFGSLLGAD
401: PAIRPINTDG AQKAIQVGQK RGRLTLNEEE EQPQKKIRIG VPATQWISIY NARKPMKQRY HYNVADTRLA QHVEKGSVDG LSISCVASCS SLWAIIMDAG
501: TNFTSQVYEL SPFFLHKEWI MEQWEKNYYI SSLAGGINGA SLVVMSKGTQ FTQQSYKVSE SFPFKWISKK WKEGFHVTSM ATANTRWAVV MSRNSGFSDQ
601: VVELDFLYPS EGIHKRWDNG YRITATAATP DQAALILSVP RRRPGDETQE TLRTSQFPST HVKEKWGKNL YLSCLCYGRT VS

Best Arabidopsis Sequence Match ( AT3G13670.1 )
(BLAST)

001: MPELRRGVRR GRVTDAVAPN QLPQTPTEKK PKKSTVKAPK PVAGGVTGVA ERPRTRLAAR KLKEEDKEIP QEIPVVVPSK DSDIDKNKGK EVVVEEEKKD
101: MAIGNDSGGS NKAAAQEEEG NTAPFPERVQ VGGSPLYKVE RKLGKGGFGQ VFVGRRISGG NDRSAGASIL EVALKFEHRS SKGCNYGPPH EWQVYNTLGG
201: SHGVPRVHFK GRQGDYYVMV MDMLGPSLWD LWNTSGQAMS SEMVACIAVE SLSILEKMHA KGYVHGDVKP ENFLLGQPST SQEKKLFLVD LGLATKWREG
301: GSGQHVEYDQ RPDMFRGTVR YASAHAHLGR TASRRDDLES LAYTLIFLHR GRLPWQGYQG DNKSFLVCKK KMATSPDMLC CFCPPPFKQF LEIVVNMKFD
401: EEPNYGKLVS LFQDLLGENP AIRPINTEGA QKIIFQVGQK RGRLSIGEEE EDAPRKKVRL GVPATQWISI YNARQPMKQR YHYNVADIRL AQHIERGIAD
501: GLLISCVSSC SNLWALIMDA GTGFTHQVYE LSPVFLHKEW IMEQWEKNYY ISSIAGASNG SSLVVMSKGT QYTQQSYKVS DSFPFKWINK KWREGFHVTS
601: MATAGNRWGV VMSRNSGYSE QVVELDFLYP SEGIHRRWDG GFRITSTAAT TDQAALILSI PRRRLVDETQ ETLRTSQFPS THVKEKWGKN LYLASLSYGR
701: TVS

Arabidopsis Description

Casein kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LID3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.