Factsheet for Solyc08g066870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024850	Potato	cytosol	94.76	85.38
Solyc12g007280.1.1	Tomato	cytosol	72.51	73.87
Solyc09g090230.1.1	Tomato	cytosol, nucleus	17.54	57.76
Solyc06g053560.2.1	Tomato	cytosol	61.52	53.17
Solyc05g016410.2.1	Tomato	cytosol, nucleus	62.57	50.96
Solyc06g062790.2.1	Tomato	cytosol, nucleus	61.78	50.54
Solyc06g083830.2.1	Tomato	cytosol	59.95	49.89
Solyc06g008320.2.1	Tomato	cytosol, nucleus	59.69	49.89
Solyc09g066440.2.1	Tomato	cytosol	59.95	49.78
Solyc03g121820.2.1	Tomato	cytosol, nucleus	60.99	49.57
Solyc07g040720.2.1	Tomato	nucleus	60.99	49.36
Solyc09g090250.2.1	Tomato	nucleus	58.9	48.49
Solyc09g090240.1.1	Tomato	cytosol	24.08	47.18
Solyc08g066410.1.1	Tomato	cytosol	21.99	24.35
Solyc12g100310.1.1	Tomato	nucleus	27.75	17.61
Solyc01g006120.2.1	Tomato	nucleus	29.32	16.42
Solyc11g070170.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	29.32	16.18
Solyc12g095830.1.1	Tomato	nucleus	29.84	16.17
Solyc10g080700.1.1	Tomato	nucleus	29.58	15.94
Solyc08g066400.1.1	Tomato	cytosol	6.02	6.91

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.4.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0008152	GO:GO:0008360	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043
GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	InterPro:IPR000719	UniProt:K4CLR3
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909
PANTHER:PTHR11909:SF97	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc08g066870.2	EnsemblPlants:Solyc08g066870.2.1	UniParc:UPI000276BEB4	:	:	:

Description

No Description!

Coordinates

chr8:-:55742674..55751028

Molecular Weight (calculated)

43603.6 Da

IEP (calculated)

10.026

GRAVY (calculated)

-0.395

Length

382 amino acids

Sequence
(BLAST)

001: MERIIGEKYK LGRKIGSGSF GVIYLATHIE TFEIVAVKIE NRQTRHPQLL YEAKLYTILQ GGSGIPNIKW RGVDGNDSVL IIDLLGPSLE DLVVHCGRKF
101: SLKTVLMLAD QTITRIEYLH SKGFLHRDIK PDNFLMGLGR KANQVYVIDF GLAKRYRDPT TSRHIPYREN KNLTGTARYA SCNTHLGIEQ SRRDDLESLG
201: YVLLYFLRGS LPWQGLKADT KKQKYDKIRE KKVSTTIEVL CKSLPVEFAS YLHYCHSLTF DQRPDYGFLK RLFRDLFTRE GYKMDYVFDW TILKYQQTQR
301: SKSQLELPSL HPLSVTTGSG ALPKVLNKQG GNNATLLAEA TKQKVSSNFV RGDGSAANLK SDYRTGKNVS NIQYFWSFYV VG

Best Arabidopsis Sequence Match ( AT4G28880.3 )
(BLAST)

001: MERIIGGKYK LGRKIGGGSF GEIFLATHVD TFEIVAVKIE NSKTKHPQLL YEAKLYRILE GGSGIPRIKW FGVDGTENAL VMDLLGPSLE DLFVYCGRKF
101: SPKTVLMLAD QMLTRIEFVH SKGYLHRDIK PDNFLMGLGR KANQVYLIDF GLAKRYRDAN TNRHIPYREN KNLTGTARYA SCNTHLGIEQ SRRDDLESLG
201: YVLLYFLRGS LPWQGLKAVD KKQKYDKICE KKISTPIEVL CKNHPVEFAS YFHYCHTLTF DQRPDYGFLK RLFRDLFSRE GYEFDYIFDW TIIKYQQAQK
301: SRNQSQAVPG SSNPRAMPVD TSNHRGGPNI SYEAEASERV RSANAIGPSP QINNNTAAGR TPGFDHPVHK NMNMPSTSLS PAGTSKRNVG PETSNSGYGS
401: GNRTGWTSSF MSPEK

Arabidopsis Description

CKL3Ckl3 [Source:UniProtKB/TrEMBL;Acc:A0A178UXY3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.