Factsheet for VIT_11s0016g01950.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g01360.t01
VIT_14s0030g01760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72710.1	VIT_06s0061g01360.t01	AT2G27770.1	21798944
AT4G26100.1	VIT_14s0030g01760.t01	AT5G28150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12421	Soybean	cytosol	33.54	95.21
KRH02686	Soybean	nucleus	83.12	86.78
KRH19210	Soybean	nucleus	82.91	86.56
VIT_09s0002g01740.t01	Wine grape	cytosol	85.02	85.56
EES01354	Sorghum	cytosol	82.07	82.77
KRH37421	Soybean	nucleus	79.32	82.46
Bra035646.1-P	Field mustard	cytosol	62.45	82.22
HORVU3Hr1G066800.6	Barley	cytosol	81.22	81.22
TraesCS3D01G252000.2	Wheat	cytosol	79.54	79.7
TraesCS3B01G281100.2	Wheat	cytosol	79.54	79.7
TraesCS3A01G251600.2	Wheat	cytosol	79.32	79.49
CDY49859	Canola	cytosol	77.85	79.35
AT5G57015.1	Thale cress	cytosol	72.57	79.08
Bra008043.1-P	Field mustard	cytosol	77.43	78.92
CDY11892	Canola	cytosol	71.31	78.6
CDX96430	Canola	cytosol	77.0	78.49
Bra016039.1-P	Field mustard	cytosol	77.0	78.49
CDY53866	Canola	cytosol	73.84	78.48
CDX88601	Canola	cytosol	71.1	78.37
Bra006839.1-P	Field mustard	cytosol	71.1	78.37
AT1G72710.1	Thale cress	cytosol	76.79	78.28
CDY38255	Canola	cytosol	70.68	77.91
CDY54387	Canola	cytosol	71.1	77.83
Bra013949.1-P	Field mustard	cytosol	75.53	77.83
CDX94377	Canola	cytosol	75.32	77.61
Bra002771.1-P	Field mustard	cytosol	70.89	77.6
AT4G26100.1	Thale cress	cytosol	73.63	77.56
CDY20695	Canola	cytosol	68.14	77.27
CDY32908	Canola	cytosol	68.14	77.09
CDX72938	Canola	cytosol	76.58	76.74
Zm00001d011696_P002	Maize	cytosol	69.62	74.49
CDY69293	Canola	cytosol	53.59	72.99
KRH12422	Soybean	cytosol, nucleus	43.46	71.53
Zm00001d043693_P002	Maize	cytosol	68.57	70.04
VIT_07s0005g03710.t01	Wine grape	cytosol	60.76	62.88
VIT_05s0049g01240.t01	Wine grape	cytosol	60.97	62.28
VIT_11s0016g03460.t01	Wine grape	cytosol	53.8	58.89
VIT_19s0085g00700.t01	Wine grape	cytosol	9.7	38.02
CDX82685	Canola	cytosol, nucleus, vacuole	22.78	34.73
VIT_04s0008g00160.t01	Wine grape	cytosol	33.12	22.59
VIT_09s0002g03680.t01	Wine grape	cytosol	33.54	22.59
VIT_08s0007g07420.t01	Wine grape	cytosol	32.28	21.58
VIT_11s0016g04060.t01	Wine grape	cytosol	31.65	21.43
VIT_06s0004g01090.t01	Wine grape	nucleus	31.86	21.15

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100261234	wikigene:100261234	MapMan:18.4.4.1	UniProt:A5ASJ8	EMBL:AM433916
ProteinID:CAN80417	ProteinID:CAN80417.1	ProteinID:CBI27888	ProteinID:CBI27888.3	EMBL:FN595756	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008152	GO:GO:0008360
GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100261234	wikigene:LOC100261234	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR11909	PANTHER:PTHR11909:SF298	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC62364	TIGR:TC65642
UniParc:UPI0001523CD8	ArrayExpress:VIT_11s0016g01950	EnsemblPlantsGene:VIT_11s0016g01950	EnsemblPlants:VIT_11s0016g01950.t01	unigene:Vvi.1427	RefSeq:XP_002281345
RefSeq:XP_002281345.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:1583546..1589897

Molecular Weight (calculated)

53005.9 Da

IEP (calculated)

10.073

GRAVY (calculated)

-0.560

Length

474 amino acids

Sequence
(BLAST)

001: MEPRVGNKFR LGRKIGSGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYRILQ GGTGIPNVRW FGVEGEYNVL VMDLLGPSLE DLFNFCSRKL
101: SLKSVLMLAD QMINRVEFVH SKSFLHRDIK PDNFLMGLGR RANQVYIIDF GLAKKYRDTA THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG
201: YVLMYFLRGS LPWQGLKAGT KKQKYEKISE RKVSTSIEVL CRGYPTEFAS YFHYCRSLRF DDKPDYAYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL
301: ATPPSRVLGP GAGTSSGLPP PAVANADRQS GEEGRPAGLS SMDPSRRRIS GDGGGLSKQK SPVASDLAVS KDAMLSSSHF LGRSSGSSRR AAVSSSRDAA
401: IMGSESDPSR AHTTEASPGA AVRRISSGQR SSPVGSSDPK RTSSGRNITN IKNYESTIRG IENLNFDNDE RVHY

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.