Factsheet for GSMUA_Achr6P18200_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02970_001	Banana	cytosol	14.61	90.7
GSMUA_Achr8P16140_001	Banana	plastid	81.27	80.67
GSMUA_Achr2P20430_001	Banana	cytosol	9.74	60.47
GSMUA_Achr3P02980_001	Banana	cytosol	42.7	46.53
GSMUA_Achr2P03480_001	Banana	cytosol	10.11	25.0
GSMUA_Achr11P...	Banana	cytosol	20.6	22.0

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	InterPro:AhpC/TSA	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869
EnsemblPlantsGene:GSMUA_Achr6G18200_001	EnsemblPlants:GSMUA_Achr6P18200_001	EnsemblPlants:GSMUA_Achr6T18200_001	InterPro:IPR013766	UniProt:M0T818	PFAM:PF00578
PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681	PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ
InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002962132	:

Description

peroxiredoxin, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G18200_001]

Coordinates

chr6:-:12292295..12309117

Molecular Weight (calculated)

29287.1 Da

IEP (calculated)

7.431

GRAVY (calculated)

-0.132

Length

267 amino acids

Sequence
(BLAST)

001: MACSLSSLVA SKPTAPLASL APTSIPPSGT QAIPKGFHGL RRSLQPRPAR MISAPRTSQR SFVVKASSES YSPLVGNKAP DFEAEAVFDQ EFINVKLSDY
101: IGKKYVILFF YPLDFTFVCP TEITAFSDRY SEFEKLNTEI LGVSVDSVFS HLAWVQTDRK SGGLGDLNYP LISDITKSIS KSYGVLIPDQ GIALRGLFII
201: DKEGVIQHST INNLAIGRSV DETMRTLQAL QYVQENPDEV CPAGWKPGEK SMKPDPKLSK EYFAAVP

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.