CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH33290
KRH67987
KRH72015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	KRH33290	AT2G41680.1	25448674
AT3G11630.1	KRH72015	AT2G41680.1	25448674
AT5G06290.1	KRH33290	AT2G41680.1	25448674
AT5G06290.1	KRH72015	AT2G41680.1	25448674
AT5G06290.1	KRH67987	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02970_001	Banana	cytosol	18.56	83.72
CDY67317	Canola	endoplasmic reticulum	55.15	68.15
CDY67795	Canola	cytosol	68.04	53.66
KRH32817	Soybean	nucleus, plastid	70.1	52.71
KRH72215	Soybean	nucleus	70.62	52.69
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	68.56	51.15
Zm00001d050666_P001	Maize	plastid	68.04	50.77
EES06920	Sorghum	plastid	67.53	50.38
TraesCS2D01G295500.2	Wheat	plastid	65.98	49.61
TraesCS2A01G297500.1	Wheat	plastid	65.98	49.61
CDY01041	Canola	plastid	65.98	49.23
Bra009181.1-P	Field mustard	plastid	68.04	49.07
Os02t0537700-01	Rice	extracellular	65.98	49.04
HORVU2Hr1G073760.2	Barley	plastid	65.98	48.85
AT5G06290.1	Thale cress	plastid	68.56	48.72
CDY08508	Canola	plastid	65.46	48.66
Bra034824.1-P	Field mustard	plastid	65.46	48.66
TraesCS2B01G313700.1	Wheat	golgi, plastid	65.46	48.47
CDX73860	Canola	plastid	66.49	48.13
AT3G11630.1	Thale cress	plastid	65.46	47.74
CDY56598	Canola	cytosol	65.98	46.21
Bra038667.1-P	Field mustard	plastid	52.06	44.89
CDX73858	Canola	plastid	65.98	42.81
KRG96244	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.45	42.73
Bra001415.1-P	Field mustard	plastid	64.43	40.72
KRH04627	Soybean	extracellular	25.26	39.52
KRH42408	Soybean	endoplasmic reticulum	20.62	18.35
KRH58527	Soybean	cytosol, endoplasmic reticulum, mitochondrion	15.46	17.05

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	UniProt:A0A0R0KTK4	EMBL:ACUP02002096	InterPro:AhpC/TSA
EnsemblPlantsGene:GLYMA_03G200600	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016209	GO:GO:0016491	GO:GO:0042744	GO:GO:0051920	GO:GO:0055114
GO:GO:0098869	EnsemblPlants:KRH67987	ProteinID:KRH67987	ProteinID:KRH67987.1	PFAM:PF00578	PFAM:PF10417
PIRSF:PIRSF000239	PANTHER:PTHR10681	PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0006EE0C29	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:40935013..40937411

Molecular Weight (calculated)

21898.2 Da

IEP (calculated)

6.013

GRAVY (calculated)

-0.289

Length

194 amino acids

Sequence
(BLAST)

001: MVATYHYEWR FPCHVAVPSK LATRNDDLLY YPCKSKLPLV GNTAPDFEAE AVFDLEFIKH NWQNCMDSVL LFFSETCYKE LEFQTDRKSG GLGHLKYPLV
101: SDITKSTSKS YGVLIPDQGI ALRGLFIIDK EGVIQHSTIN NLAIGRSVDE TKITLQALQY VQENPDEVCP AGWKPGEKSM KPDPKLSKDY FAAV

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.