CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06920
KXG36845

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	KXG36845	AT2G41680.1	25448674
AT5G06290.1	KXG36845	AT2G41680.1	25448674
AT5G06290.1	EES06920	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	96.54	96.54
Zm00001d050666_P001	Maize	plastid	95.38	95.38
CDY67317	Canola	endoplasmic reticulum	54.23	89.81
Os02t0537700-01	Rice	extracellular	85.0	84.67
TraesCS2D01G295500.2	Wheat	plastid	76.54	77.13
TraesCS2A01G297500.1	Wheat	plastid	76.54	77.13
CDY67795	Canola	cytosol	72.31	76.42
TraesCS2B01G313700.1	Wheat	golgi, plastid	76.92	76.34
HORVU2Hr1G073760.2	Barley	plastid	76.54	75.95
CDX73860	Canola	plastid	76.15	73.88
AT3G11630.1	Thale cress	plastid	75.0	73.31
CDY01041	Canola	plastid	73.08	73.08
Bra034824.1-P	Field mustard	plastid	72.69	72.41
Solyc10g082030.1.1	Tomato	plastid	74.23	72.28
CDY08508	Canola	plastid	72.31	72.03
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	73.85	71.91
Bra009181.1-P	Field mustard	plastid	74.23	71.75
Solyc01g007740.2.1	Tomato	plastid	73.08	71.16
AT5G06290.1	Thale cress	plastid	73.85	70.33
CDY56598	Canola	cytosol	74.62	70.04
Bra038667.1-P	Field mustard	plastid	60.38	69.78
VIT_08s0007g02490.t01	Wine grape	plastid	73.08	69.6
PGSC0003DMT400042222	Potato	plastid	72.31	69.12
KRH67987	Soybean	endoplasmic reticulum	50.38	67.53
CDX73858	Canola	plastid	75.0	65.22
Bra001415.1-P	Field mustard	plastid	72.69	61.56
EER97619	Sorghum	cytosol	20.77	24.32

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	InterPro:AhpC/TSA	UniProt:C5XU11	EnsemblPlants:EES06920
ProteinID:EES06920	ProteinID:EES06920.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491
GO:GO:0019725	GO:GO:0042744	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681
PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	EnsemblPlantsGene:SORBI_3004G168500	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0001FCCEBE	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:51908996..51912917

Molecular Weight (calculated)

28083.6 Da

IEP (calculated)

6.537

GRAVY (calculated)

0.002

Length

260 amino acids

Sequence
(BLAST)

001: MACSFAAATT VSSAPTPASR PLAAAPQSVS VARSAVATAA RPLRLAASRS ARATRLVARA GGVDDLPLVG NKAPDFEAEA VFDQEFINVK LSDYIGKKYV
101: ILFFYPLDFT FVCPTEITAF SDRYEEFEKL NTEVLGVSID SVFSHLAWVQ TDRKSGGLGD LKYPLISDVT KSISKAFGVL IPSQGIALRG LFIIDKEGVI
201: QHSTINNLAI GRSVDETMRT LQALQYVQEN PDEVCPAGWK PGEKSMKPDP KGSKEYFAAI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.