Factsheet for Zm00001d050666_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
extracellular: 22192489
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016736_P001
Zm00001d022381_P016
Zm00001d050666_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	Zm00001d022381_P016	AT2G41680.1	25448674
AT5G06290.1	Zm00001d022381_P016	AT2G41680.1	25448674
AT5G06290.1	Zm00001d016736_P001	AT3G11630.1	21798944
AT5G06290.1	Zm00001d050666_P001	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06920	Sorghum	plastid	95.38	95.38
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	94.23	94.23
CDY67317	Canola	endoplasmic reticulum	54.62	90.45
Os02t0537700-01	Rice	extracellular	83.46	83.14
TraesCS2D01G295500.2	Wheat	plastid	76.92	77.52
TraesCS2A01G297500.1	Wheat	plastid	76.92	77.52
CDY67795	Canola	cytosol	72.69	76.83
TraesCS2B01G313700.1	Wheat	golgi, plastid	77.31	76.72
HORVU2Hr1G073760.2	Barley	plastid	76.92	76.34
CDY01041	Canola	plastid	74.23	74.23
Bra034824.1-P	Field mustard	plastid	73.85	73.56
CDX73860	Canola	plastid	75.77	73.51
CDY08508	Canola	plastid	73.46	73.18
AT3G11630.1	Thale cress	plastid	74.62	72.93
Bra009181.1-P	Field mustard	plastid	74.62	72.12
Solyc10g082030.1.1	Tomato	plastid	73.46	71.54
AT5G06290.1	Thale cress	plastid	75.0	71.43
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	73.08	71.16
Solyc01g007740.2.1	Tomato	plastid	72.69	70.79
CDY56598	Canola	cytosol	74.23	69.68
VIT_08s0007g02490.t01	Wine grape	plastid	73.08	69.6
Bra038667.1-P	Field mustard	plastid	60.0	69.33
PGSC0003DMT400042222	Potato	plastid	71.92	68.75
KRH67987	Soybean	endoplasmic reticulum	50.77	68.04
CDX73858	Canola	plastid	74.62	64.88
Bra001415.1-P	Field mustard	plastid	71.92	60.91
Zm00001d022278_P001	Maize	cytosol	20.77	23.58

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	ProteinID:AQK52899.1	InterPro:AhpC/TSA	EMBL:BT087524
UniProt:C4J9M7	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454
GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	PFAM:PF00578	PFAM:PF10417
PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681	PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001A4C90C	EnsemblPlantsGene:Zm00001d050666	EnsemblPlants:Zm00001d050666_P001
EnsemblPlants:Zm00001d050666_T001	SEG:seg	:	:	:	:

Description

2-Cys peroxiredoxin BAS1 chloroplastic

Coordinates

chr4:+:113569136..113572987

Molecular Weight (calculated)

28273.8 Da

IEP (calculated)

5.880

GRAVY (calculated)

0.032

Length

260 amino acids

Sequence
(BLAST)

001: MACSFSAAIT VSSAPTPAAR PLAAATQSVC IARSAVATTA RPLRLAASRS ARATRLVARA SVVDDLPLVG NKAPDFEAEA VFDQEFINVK LSDYIGKKYV
101: ILFFYPLDFT FVCPTEITAF SDRYEEFEKL NTEVLGVSID SVFSHLAWVQ TDRKSGGLGD LKYPLVSDVT KSISKAFGVL IPDQGIALRG LFIIDKEGVI
201: QHSTINNLAI GRSVDETMRT LQALQYVQEN PDEVCPAGWK PGERSMKPDP KGSKEYFAAI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.