Factsheet for Solyc01g007740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007740.2.1
Solyc04g016010.2.1
Solyc10g080080.1.1
Solyc10g082030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	Solyc04g016010.2.1	AT2G41680.1	25448674
AT3G11630.1	Solyc10g080080.1.1	AT2G41680.1	25448674
AT5G06290.1	Solyc04g016010.2.1	AT2G41680.1	25448674
AT5G06290.1	Solyc10g080080.1.1	AT2G41680.1	25448674
AT5G06290.1	Solyc01g007740.2.1	AT3G11630.1	21798944
AT5G06290.1	Solyc10g082030.1.1	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67317	Canola	endoplasmic reticulum	50.19	85.35
PGSC0003DMT400042222	Potato	plastid	86.89	85.29
CDY67795	Canola	cytosol	68.91	74.8
CDY01041	Canola	plastid	72.66	74.62
Solyc10g082030.1.1	Tomato	plastid	74.53	74.53
KRH32817	Soybean	nucleus, plastid	71.91	74.42
Os02t0537700-01	Rice	extracellular	72.66	74.33
KRH72215	Soybean	nucleus	71.91	73.85
CDX73860	Canola	plastid	73.78	73.51
EES06920	Sorghum	plastid	71.16	73.08
AT3G11630.1	Thale cress	plastid	72.66	72.93
Bra038667.1-P	Field mustard	plastid	61.42	72.89
Bra009181.1-P	Field mustard	plastid	73.41	72.86
Zm00001d050666_P001	Maize	plastid	70.79	72.69
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	70.79	72.69
TraesCS2A01G297500.1	Wheat	plastid	70.04	72.48
TraesCS2D01G295500.2	Wheat	plastid	70.04	72.48
VIT_08s0007g02490.t01	Wine grape	plastid	73.78	72.16
HORVU2Hr1G073760.2	Barley	plastid	70.79	72.14
CDY08508	Canola	plastid	70.41	72.03
TraesCS2B01G313700.1	Wheat	golgi, plastid	70.41	71.76
AT5G06290.1	Thale cress	plastid	73.03	71.43
Bra034824.1-P	Field mustard	plastid	69.66	71.26
CDY56598	Canola	cytosol	70.04	67.51
CDX73858	Canola	plastid	74.16	66.22
Bra001415.1-P	Field mustard	plastid	70.04	60.91
KRG96244	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.06	59.55
KRH04627	Soybean	extracellular	22.1	47.58
GSMUA_Achr3P02980_001	Banana	cytosol	40.82	44.49
Solyc03g096040.2.1	Tomato	extracellular	22.85	27.85

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	InterPro:AhpC/TSA	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	UniProt:K4ASX2	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352
PANTHER:PTHR10681	PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc01g007740.2
EnsemblPlants:Solyc01g007740.2.1	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002762B08	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:1903993..1908309

Molecular Weight (calculated)

29260.7 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.084

Length

267 amino acids

Sequence
(BLAST)

001: MASIVTSTAL LSSSNPRVFA SASASSALPK LPSFSQSTIV PSSSSFNGLR SCNTSVSRIN KSRSFVVRAS SEVPLVGNKA PDFEAEAVFD QEFIKVKLSE
101: YIGKKYVILF FYPLDFTFVC PTEITAFSDR YEEFKNVNTE ILGVSIDSVF SHLAWVQTDR KTGGLGDLNY PLISDVTKSI SKSYNVLIPD QGIALRGLFI
201: IDKEGVIQHS TINNLAIGRS VDETLRTLQA LQYVQENPDE VCPAGWKPGD KSMKPDPKGS KEYFASI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.