CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 5
vacuole 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73858
CDX73860
CDX79923
CDY01041
CDY08508
CDY22534
CDY23835
CDY35405
CDY56598

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06290.1	CDX79923	AT2G41680.1	25448674
AT5G06290.1	CDY22534	AT2G41680.1	25448674
AT5G06290.1	CDY23835	AT2G41680.1	25448674
AT5G06290.1	CDY35405	AT2G41680.1	25448674
AT5G06290.1	CDX73858	AT3G11630.1	21798944
AT5G06290.1	CDX73860	AT3G11630.1	21798944
AT5G06290.1	CDY01041	AT3G11630.1	21798944
AT5G06290.1	CDY08508	AT3G11630.1	21798944
AT5G06290.1	CDY56598	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02970_001	Banana	cytosol	24.84	90.7
CDY67795	Canola	cytosol	96.18	61.38
Bra009181.1-P	Field mustard	plastid	96.18	56.13
TraesCS2D01G295500.2	Wheat	plastid	91.08	55.43
TraesCS2A01G297500.1	Wheat	plastid	91.08	55.43
CDY01041	Canola	plastid	91.72	55.38
CDY08508	Canola	plastid	91.72	55.17
KRH67987	Soybean	endoplasmic reticulum	68.15	55.15
AT5G06290.1	Thale cress	plastid	95.54	54.95
Zm00001d050666_P001	Maize	plastid	90.45	54.62
HORVU2Hr1G073760.2	Barley	plastid	91.08	54.58
TraesCS2B01G313700.1	Wheat	golgi, plastid	91.08	54.58
EES06920	Sorghum	plastid	89.81	54.23
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	89.17	53.85
CDX73860	Canola	plastid	91.72	53.73
Os02t0537700-01	Rice	extracellular	88.53	53.26
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	90.45	53.18
Solyc10g082030.1.1	Tomato	plastid	89.17	52.43
CDY56598	Canola	cytosol	91.72	51.99
VIT_08s0007g02490.t01	Wine grape	plastid	88.53	50.92
Solyc01g007740.2.1	Tomato	plastid	85.35	50.19
PGSC0003DMT400042222	Potato	plastid	85.99	49.63
CDX73858	Canola	plastid	92.36	48.49
CDY72143	Canola	cytosol	17.2	21.26
CDY72482	Canola	cytosol	13.38	20.0
CDY13290	Canola	cytosol	8.28	16.88

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	GO:A0A078JPN5	UniProt:A0A078JPN5	InterPro:AhpC/TSA
EnsemblPlants:CDY67317	ProteinID:CDY67317	ProteinID:CDY67317.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00060633001
InterPro:IPR013766	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681
PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	SignalP:SignalP-noTM	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0004EE4AD3	:	:	:	:

Description

BnaAnng24020DBnaAnng24020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPN5]

Coordinates

chrLK035967:-:805..1893

Molecular Weight (calculated)

17592.0 Da

IEP (calculated)

4.982

GRAVY (calculated)

-0.113

Length

157 amino acids

Sequence
(BLAST)

001: MHVHAVFFFF FCEITAFSDR YEEFEKLNTE VLGVSVDSVF SHLAWVQTER KSGGLGDLNY PLVSDITKSI SKSFGVLIPD QGIALRGLFI IDKEGVIQHS
101: TINNLGIGRS VDETMRTLQA LQYVQENPDE VCPAGWKPGE KSMKPDPKLS KEYFSAI

Best Arabidopsis Sequence Match ( AT3G11630.1 )
(BLAST)

001: MASVASSTTL ISSPSSRVFP AKSSLSSPSV SFLRTLSSPS ASASLRSGFA RRSSLSSTSR RSFAVKAQAD DLPLVGNKAP DFEAEAVFDQ EFIKVKLSDY
101: IGKKYVILFF YPLDFTFVCP TEITAFSDRH SEFEKLNTEV LGVSVDSVFS HLAWVQTDRK SGGLGDLNYP LISDVTKSIS KSFGVLIHDQ GIALRGLFII
201: DKEGVIQHST INNLGIGRSV DETMRTLQAL QYIQENPDEV CPAGWKPGEK SMKPDPKLSK EYFSAI

Arabidopsis Description

BAS12-Cys peroxiredoxin BAS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.