Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g03870.t01 | Wine grape | cytosol | 52.19 | 57.69 |
| KRH60909 | Soybean | endoplasmic reticulum | 60.04 | 56.87 |
| PGSC0003DMT400025666 | Potato | cytosol | 8.95 | 55.56 |
| KRH51589 | Soybean | endoplasmic reticulum | 58.95 | 55.11 |
| CDX96625 | Canola | cytosol | 49.8 | 51.12 |
| Bra012247.1-P | Field mustard | cytosol | 50.6 | 50.9 |
| Bra025842.1-P | Field mustard | cytosol | 50.6 | 50.75 |
| CDY01356 | Canola | cytosol | 49.4 | 50.71 |
| CDY31869 | Canola | cytosol | 49.9 | 50.66 |
| AT1G20760.1 | Thale cress | cytosol | 51.19 | 50.54 |
| CDY29508 | Canola | cytosol | 49.6 | 50.25 |
| CDY66337 | Canola | cytosol | 49.4 | 50.2 |
| CDY33644 | Canola | cytosol | 48.41 | 48.99 |
| GSMUA_Achr5P19150_001 | Banana | endoplasmic reticulum | 45.63 | 48.47 |
| GSMUA_Achr8P13420_001 | Banana | cytosol | 45.53 | 48.11 |
| Solyc04g082560.2.1 | Tomato | cytosol | 54.67 | 44.79 |
| EER92924 | Sorghum | cytosol | 46.02 | 44.31 |
| Os03t0130500-01 | Rice | plasma membrane | 46.22 | 43.54 |
| Bra016455.1-P | Field mustard | nucleus, plastid | 48.91 | 43.35 |
| Solyc02g082530.1.1 | Tomato | nucleus | 4.17 | 43.3 |
| GSMUA_Achr4P11750_001 | Banana | cytosol | 45.83 | 42.96 |
| TraesCS4B01G324500.1 | Wheat | cytosol | 45.53 | 42.53 |
| TraesCS4D01G321600.1 | Wheat | cytosol | 45.83 | 42.33 |
| TraesCS5A01G497000.1 | Wheat | cytosol | 45.33 | 42.07 |
| HORVU4Hr1G082280.2 | Barley | cytosol | 45.43 | 40.41 |
| Os06t0728600-00 | Rice | plasma membrane | 35.69 | 40.16 |
| Zm00001d048338_P035 | Maize | cytosol | 41.85 | 38.8 |
| Zm00001d027503_P036 | Maize | cytosol | 40.56 | 38.45 |
| Zm00001d037125_P009 | Maize | cytosol | 42.05 | 35.02 |
| Zm00001d014862_P002 | Maize | cytosol | 41.75 | 34.68 |
| EER89004 | Sorghum | cytosol | 41.65 | 34.18 |
| TraesCS7A01G553100.1 | Wheat | cytosol | 42.54 | 33.08 |
| TraesCS7D01G539600.2 | Wheat | cytosol | 42.05 | 32.74 |
| TraesCS7B01G476800.3 | Wheat | cytosol | 42.15 | 32.64 |
| HORVU7Hr1G121230.4 | Barley | cytosol | 40.85 | 31.71 |
| VIT_19s0090g01130.t01 | Wine grape | cytosol | 12.03 | 22.2 |
| VIT_00s0516g00020.t01 | Wine grape | cytosol | 11.93 | 21.82 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:100240982 | wikigene:100240982 | MapMan:22.1.4.7 | ProteinID:CCB62658 | ProteinID:CCB62658.1 |
| InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | InterPro:EH_dom | UniProt:F6I6U0 | EMBL:FN596759 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | InterPro:IPR000261 | InterPro:IPR002048 | EntrezGene:LOC100240982 | wikigene:LOC100240982 | PFAM:PF12763 |
| PFAM:PF13202 | PFscan:PS50031 | PFscan:PS50222 | PANTHER:PTHR11216 | PANTHER:PTHR11216:SF116 | SMART:SM00027 |
| SMART:SM00054 | SUPFAM:SSF47473 | TIGR:TC57193 | TIGR:TC62380 | UniParc:UPI00015CD4D4 | ArrayExpress:VIT_18s0122g01080 |
| EnsemblPlantsGene:VIT_18s0122g01080 | EnsemblPlants:VIT_18s0122g01080.t01 | RefSeq:XP_002272793 | RefSeq:XP_002272793.2 | RefSeq:XP_010663990.1 | SEG:seg |
Description
No Description!
Coordinates
chr18:-:749993..760218
Molecular Weight (calculated)
109192.0 Da
IEP (calculated)
5.218
GRAVY (calculated)
-0.671
Length
1006 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELFDAYFRR ADLDGDGRIS GAEAVAFFQG SNLAKHVLAQ VWMHADPAGT GFLGRAEFYN ALKLVTVAQS KRELTPDIVK AALYGPAAAK IPAPQINLAA
0101: IPSPQPNQMT TTPAPQMGAV APTASQNLGF RGQTLPNPST NQQYFPSQQN QFMRPPQPMP AGSASRPPQN LAGPELNRGG NMVGPGVPNS NISSDWLSGR
0201: TAGAPTGPLS QVPNRGITPS MPPPTTKPLD LASTPKAPVV SGNGFASDPV FGGNVFSATP TQQKRDSSGL TYSVSSSPAS SVALSPAPTG SPSLSKPSSL
0301: DSLQSAFTMG PAGGQIQRAQ SAGNLNQPAP PQSTSPLSSS GVSVGVGNSA SNQSQLPWPR MTPSDVQKYT KVFIEVDSDR DGKITGEQAR NLFLSWRLPR
0401: EVLKQVWDLS DQDSDSMLSL REFCTALYLM ERYREGRPLP AVLPSNILFD ETLFPMMGQQ ASFGNAARPP TPGLSHQHGI PGVRQMTTAP GLGPPIQVAL
0501: QGDGAMQPNQ QKISGLVSED VFGNQLSNGG KNGLNLTHQD VTDSEKKVEA TENVILDSKE KIELYRTKMQ ELVLYKSRCD NRLNEITERA SSDKREAEFV
0601: TKKYEEKYKQ VAEIASKLAM EDARFRDLQG RKNELHQAII KMEQGGSADG ILQVRADRIQ SDLEELIKAL TDRCKKHGLD VKSTAIIELP IGWEPGFQEG
0701: AAIWDEDWDK FEDEGLSFAK DCAIDVQNGV GSPKSKSTSI QKDNASSFGE HGIENESAYT HSEDDLARSP PGSPGGRTSL ESPSQELSNN HFRKSSEADT
0801: EIHRSFDEPN WEPSFDHNDD TDSIWGFNPS TTKDFDSDKH RENDIFGSGN LGINPIRTES PHDDPFQRKS PFSFEDSVPS TPLSKFGNSP RYSEWAGEHH
0901: FDMSSRFDSF SMHDGGFSPP RETLTRFDSI SSSRDFGHGQ ARFDSLNSGR DFGPGHARFD SISSSRGFDH GQTYSFDDSD PFGSTGPFKV SSDSQTPRKG
1001: SDNWGF
0101: IPSPQPNQMT TTPAPQMGAV APTASQNLGF RGQTLPNPST NQQYFPSQQN QFMRPPQPMP AGSASRPPQN LAGPELNRGG NMVGPGVPNS NISSDWLSGR
0201: TAGAPTGPLS QVPNRGITPS MPPPTTKPLD LASTPKAPVV SGNGFASDPV FGGNVFSATP TQQKRDSSGL TYSVSSSPAS SVALSPAPTG SPSLSKPSSL
0301: DSLQSAFTMG PAGGQIQRAQ SAGNLNQPAP PQSTSPLSSS GVSVGVGNSA SNQSQLPWPR MTPSDVQKYT KVFIEVDSDR DGKITGEQAR NLFLSWRLPR
0401: EVLKQVWDLS DQDSDSMLSL REFCTALYLM ERYREGRPLP AVLPSNILFD ETLFPMMGQQ ASFGNAARPP TPGLSHQHGI PGVRQMTTAP GLGPPIQVAL
0501: QGDGAMQPNQ QKISGLVSED VFGNQLSNGG KNGLNLTHQD VTDSEKKVEA TENVILDSKE KIELYRTKMQ ELVLYKSRCD NRLNEITERA SSDKREAEFV
0601: TKKYEEKYKQ VAEIASKLAM EDARFRDLQG RKNELHQAII KMEQGGSADG ILQVRADRIQ SDLEELIKAL TDRCKKHGLD VKSTAIIELP IGWEPGFQEG
0701: AAIWDEDWDK FEDEGLSFAK DCAIDVQNGV GSPKSKSTSI QKDNASSFGE HGIENESAYT HSEDDLARSP PGSPGGRTSL ESPSQELSNN HFRKSSEADT
0801: EIHRSFDEPN WEPSFDHNDD TDSIWGFNPS TTKDFDSDKH RENDIFGSGN LGINPIRTES PHDDPFQRKS PFSFEDSVPS TPLSKFGNSP RYSEWAGEHH
0901: FDMSSRFDSF SMHDGGFSPP RETLTRFDSI SSSRDFGHGQ ARFDSLNSGR DFGPGHARFD SISSSRGFDH GQTYSFDDSD PFGSTGPFKV SSDSQTPRKG
1001: SDNWGF
0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.