Factsheet for VIT_11s0052g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0555g00010.t01
VIT_00s0555g00020.t01
VIT_00s0783g00010.t01
VIT_00s0961g00020.t01
VIT_01s0011g00540.t01
VIT_02s0025g00900.t01
VIT_02s0025g03950.t01
VIT_03s0038g04270.t01
VIT_04s0008g07380.t01
VIT_04s0008g07390.t01
VIT_05s0077g01770.t01
VIT_05s0094g00690.t01
VIT_05s0094g01170.t01
VIT_05s0094g01180.t01
VIT_05s0094g01390.t01
VIT_05s0094g01650.t01
VIT_06s0004g00470.t01
VIT_06s0004g07260.t01
VIT_06s0061g01170.t01
VIT_07s0005g00680.t01
VIT_08s0007g02490.t01
VIT_08s0056g00040.t01
VIT_08s0105g00400.t01
VIT_09s0002g01630.t01
VIT_09s0002g06730.t01
VIT_10s0003g00890.t01
VIT_12s0028g00470.t01
VIT_12s0028g01250.t01
VIT_12s0057g00250.t01
VIT_13s0067g00550.t01
VIT_13s0067g03110.t01
VIT_14s0108g00010.t01
VIT_14s0171g00280.t01
VIT_14s0171g00430.t01
VIT_16s0022g00490.t01
VIT_16s0098g00850.t01
VIT_17s0000g07300.t01
VIT_18s0076g00310.t01
VIT_18s0122g01080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57460.1	VIT_09s0002g06730.t01	AT1G15370.1	24529374
AT5G57460.1	VIT_18s0122g01080.t01	AT1G20760.1	24529374
AT5G57460.1	VIT_02s0025g03950.t01	AT1G63250.1	24529374
AT5G57460.1	VIT_06s0004g07260.t01	AT1G63250.1	24529374
AT5G57460.1	VIT_02s0025g00900.t01	AT1G64190.1	24529374
AT5G57460.1	VIT_05s0094g00690.t01	AT1G67930.1	24529374
AT5G57460.1	VIT_12s0028g00470.t01	AT1G67930.1	24529374
AT5G57460.1	VIT_18s0076g00310.t01	AT1G76810.1	24529374
AT5G57460.1	VIT_01s0011g00540.t01	AT2G03510.1	24529374
AT5G57460.1	VIT_03s0038g04270.t01	AT2G17390.1	24529374
AT5G57460.1	VIT_12s0057g00250.t01	AT2G20800.1	24529374
AT5G57460.1	VIT_17s0000g07300.t01	AT2G33040.1	24529374
AT5G57460.1	VIT_13s0067g00550.t01	AT2G40060.1	24529374
AT5G57460.1	VIT_13s0067g03110.t01	AT2G40730.1	24529374
AT5G57460.1	VIT_05s0094g01390.t01	AT2G43950.1	24529374
AT5G57460.1	VIT_14s0108g00010.t01	AT3G01280.1	24529374
AT5G57460.1	VIT_14s0171g00280.t01	AT3G01780.1	24529374
AT5G57460.1	VIT_08s0007g02490.t01	AT3G11630.1	24529374
AT5G57460.1	VIT_05s0077g01770.t01	AT3G16810.1	24529374
AT5G57460.1	VIT_00s0783g00010.t01	AT3G50590.1	24529374
AT5G57460.1	VIT_00s0961g00020.t01	AT3G50590.1	24529374
AT5G57460.1	VIT_07s0005g00680.t01	AT4G02350.1	24529374
AT5G57460.1	VIT_10s0003g00890.t01	AT4G18480.1	24529374
AT5G57460.1	VIT_00s0555g00010.t01	AT4G22690.1	24529374
AT5G57460.1	VIT_00s0555g00020.t01	AT4G22690.1	24529374
AT5G57460.1	VIT_05s0094g01170.t01	AT4G22690.1	24529374
AT5G57460.1	VIT_05s0094g01180.t01	AT4G22690.1	24529374
AT5G57460.1	VIT_08s0105g00400.t01	AT5G01380.1	24529374
AT5G57460.1	VIT_06s0004g00470.t01	AT5G19760.1	24529374
AT5G57460.1	VIT_06s0061g01170.t01	AT5G22770.1	24529374
AT5G57460.1	VIT_05s0094g01650.t01	AT5G24710.1	24529374
AT5G57460.1	VIT_08s0056g00040.t01	AT5G24710.1	24529374
AT5G57460.1	VIT_14s0171g00430.t01	AT5G40770.1	24529374
AT5G57460.1	VIT_12s0028g01250.t01	AT5G45390.1	24529374
AT5G57460.1	VIT_04s0008g07380.t01	AT5G51430.1	24529374
AT5G57460.1	VIT_04s0008g07390.t01	AT5G51430.1	24529374
AT5G57460.1	VIT_16s0022g00490.t01	AT5G51430.1	24529374
AT5G57460.1	VIT_09s0002g01630.t01	AT5G54100.1	24529374
AT5G57460.1	VIT_16s0098g00850.t01	AT5G54160.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90331	Soybean	endoplasmic reticulum	73.75	72.7
KRH02873	Soybean	endoplasmic reticulum, nucleus	73.59	72.54
PGSC0003DMT400029685	Potato	cytosol, plastid	69.4	67.87
Solyc10g078790.1.1	Tomato	nucleus	69.24	67.72
Bra002727.1-P	Field mustard	plastid	69.08	67.03
CDX88623	Canola	plastid	68.76	66.61
Bra006819.1-P	Field mustard	plastid	68.76	66.41
CDY11868	Canola	plastid	68.76	66.41
CDY38299	Canola	plastid	68.28	65.94
CDY25907	Canola	plastid	68.44	65.89
AT5G57460.1	Thale cress	cytosol	67.95	65.33
GSMUA_Achr3P27960_001	Banana	plastid	63.45	60.15
EES14778	Sorghum	plastid	59.42	57.93
Os08t0243900-01	Rice	plasma membrane, plastid	59.58	57.72
HORVU2Hr1G002480.5	Barley	cytosol	39.29	57.14
Zm00001d024416_P001	Maize	plasma membrane	58.45	56.99
TraesCS2B01G003600.1	Wheat	plastid	57.65	56.74
TraesCS2A01G014200.1	Wheat	plastid	57.65	56.38
TraesCS2D01G014900.1	Wheat	plastid	57.49	56.04
HORVU2Hr1G002410.2	Barley	plastid	58.29	52.54

Protein Annotations

EntrezGene:100258100	wikigene:100258100	MapMan:22.1.4.2	EMBL:AM432704	ProteinID:CAN60499	ProteinID:CAN60499.1
ProteinID:CCB44653	ProteinID:CCB44653.1	UniProt:F6GXG7	EMBL:FN594964	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020
InterPro:IPR028565	EntrezGene:LOC100258100	wikigene:LOC100258100	InterPro:MHD	InterPro:Muniscin_C	PFAM:PF10291
PFscan:PS51072	PANTHER:PTHR37769	UniParc:UPI0002108C4C	ArrayExpress:VIT_11s0052g00920	EnsemblPlantsGene:VIT_11s0052g00920	EnsemblPlants:VIT_11s0052g00920.t01
RefSeq:XP_002271128	RefSeq:XP_002271128.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:18550672..18553262

Molecular Weight (calculated)

66796.8 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.102

Length

621 amino acids

Sequence
(BLAST)

001: MSCLALSLQP ANGPDILLQT REWFPPARAL VALSAFRQTR QAFAAGKHQS AEDGDSSLGD DPLAASSGQL IVGVESRYRV VYRLVNGIYV LGITTVDYDL
101: GVNNVFECIG IVNQAVSVVV AACRGVDVTP DKLNRKYAEI YMALDIVLRG VSSIRLAAML ASMHSDSIAK MVHSAIDTES KIRGAENWSN VEINSVEHLA
201: SVDAFSNTRF ELPADVLAAG DEVVASIVPV QSVAEQQDQP EKKAEEEVEK DPFAASDALT KPESLVGDFK KNKDQAAVSD LTVALAGLEV TTLPPAAATD
301: STHIGVEGFE GNYGGIEFGN EEASLGETFE GFNDAFGGGL DASEFVGPKK VPKSQGLGGL ELLQTGTPAA SGAATPLEDL LVKKSEMKGP EMYIGEVISV
401: EFRESLLARV GLMGVVYLKT LPPKTSDKET EFSFRIDGTS GVKRFVMQSS RVSSLGNGMF HVRTAPSEEP IPILKYSLLP RLTPLPLRVR LIKRHSGTLL
501: SVMIQYVSNP DLPAPLTDVT FVLKLPVDPS LLKVSPKAVL NRSERELRWH VPEIPQKGAP GRLRVRMPVD SNEEDGGEEI EVVGYVKFSA QGMRSLSGVS
601: LRPASEVQPV HKSTQETGRT Q

Best Arabidopsis Sequence Match ( AT5G57460.1 )
(BLAST)

001: MSCLALALQP ANGSDILLQT REWFPPARAL IALSYFRQMR QALASSKQQH QQQSNQKQNQ ASSSSSSSSS VADPDDATAA EFVGDDPLAA SNGQVIVGVE
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN

Arabidopsis Description

At5g57460 [Source:UniProtKB/TrEMBL;Acc:Q9FKM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.