Factsheet for VIT_04s0008g07380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0022g00490.t01	Wine grape	cytosol	94.17	13.48
KRH23955	Soybean	cytosol	73.33	10.9
KRH39845	Soybean	cytosol	72.5	10.43
CDY56655	Canola	cytosol	66.67	10.15
CDY00475	Canola	cytosol	65.83	10.03
Bra028252.1-P	Field mustard	cytosol	65.83	10.01
CDX91578	Canola	cytosol	66.67	9.99
AT5G51430.1	Thale cress	cytosol	68.33	9.81
GSMUA_Achr1P16820_001	Banana	cytosol	66.67	9.78
Bra022547.1-P	Field mustard	cytosol	65.83	9.53
EER90199	Sorghum	cytosol	64.17	9.39
HORVU7Hr1G107700.1	Barley	cytosol	64.17	9.36
TraesCS7D01G458300.1	Wheat	cytosol	64.17	9.36
TraesCS7B01G372700.1	Wheat	cytosol	64.17	9.36
TraesCS7A01G470900.1	Wheat	cytosol	64.17	9.36
Zm00001d046973_P001	Maize	cytosol	63.33	8.96
Os06t0669600-01	Rice	plasma membrane	2.5	1.6
CDX99921	Canola	cytosol	8.33	1.56
CDY00472	Canola	cytosol	1.67	0.85
VIT_04s0008g07390.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

MapMan:22.6.2.7	ProteinID:CCB46908	ProteinID:CCB46908.1	InterPro:COG7	UniProt:F6H3M1	EMBL:FN595231
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0006886	GO:GO:0006890	GO:GO:0007030	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0017119	PFAM:PF10191	PANTHER:PTHR21443	UniParc:UPI0002109D75	ArrayExpress:VIT_04s0008g07380	EnsemblPlantsGene:VIT_04s0008g07380
EnsemblPlants:VIT_04s0008g07380.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:7748236..7749152

Molecular Weight (calculated)

13030.6 Da

IEP (calculated)

4.128

GRAVY (calculated)

0.057

Length

120 amino acids

Sequence
(BLAST)

001: MEESIPQVIL FLNEAVERCI SFTGGSEIDE LILAIDDIML QYISTLQETL KSLRAACGVD TGDGGGTKKE MVSDRKEGTH NACKVDLISN EEEWSIVQGA
101: LQILTVADCL TSRSAVLKLP

Best Arabidopsis Sequence Match ( AT5G51430.1 )
(BLAST)

001: MMLDLGPFSD EKFDAKRWVN SSCQARHPQD SLEKHLVDLE MKLQIASEEI GASLEEQSGG ALLRVPRATR DVLRLRDDAV SLRGSVAGIL QKLKKAEGSS
101: ADCIAALARV DNVKQRMEAA YKTLQDAAGL TQLSSTVEDV FASGDLPRAA ETLASMRNCL SAVGEVAEFA NVRKQLEVLE DRLEAMVQPR LTDALTYHKV
201: DVAQDLRVIL IRIGRFKSLE LQYSKVRLKP IKQLWEDFDT KQRANKLANE RSESQRLSSG DEFQSTSSQT SFASWLTSFY DELLLYLEQE WKWCMVAFPD
301: DYMTLVPKLL VETMGVLGAS FVSRLNLATG DAVPETKALA KGVMDLLSGD LPKGINIQTK HLEALIELHN VTGSFARNIQ HLFAESELRI LIDTLKAVYS
401: PFESFKQKYG KMERAILSSE IAVVDLRGAV TRGVGAQGIE LSETVRRMEE SIPQVVVLLE AAVERCIGFT GGSEADELIL ALDDIMLQYI SMLQETLKSL
501: RVVCGVDGTG DGVGSKKDAS AEKRESSRKM DLTSNEEWSI VQGALQILTV ADCLTSRSSV FEASLRATLA RLNSSLSISL FGTNLDHNLS HLKSEQTAGD
601: LSMAGRASMD VAAIRLVDVP EKAHKLLNLL EQSKDPRFHA LPLASQRVAA FADTVNELVY DVLISKVRQR LGEVSRLPIW SSVEEQTAFP LPNFSSYPQS
701: YVTSVGEYLL TLPQQLEPLA EGISTNGDSN NEDAQFFATE WMFKVAEGAT ALYMDQLRGI QYISDRGAQQ LSVDIEYLSN VLSALSMPIP PVLATFQTCL
801: ATPRGELKDV MKSEAGNELD CPTANLVCKM RRISFD

Arabidopsis Description

EYEConserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FGN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.