Factsheet for VIT_14s0171g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041811	Potato	plastid	89.75	91.04
Solyc11g010190.1.1	Tomato	nucleus	88.34	89.61
PGSC0003DMT400074656	Potato	plastid	85.51	87.68
CDY42555	Canola	cytosol	84.81	86.64
CDY36378	Canola	cytosol	84.81	86.64
CDY11712	Canola	cytosol	84.81	86.64
Bra025548.1-P	Field mustard	cytosol	84.81	86.64
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	84.81	86.33
KRH44804	Soybean	mitochondrion	85.16	86.07
CDX67477	Canola	extracellular	84.1	85.92
AT5G40770.1	Thale cress	extracellular, plastid	84.1	85.92
Bra028475.1-P	Field mustard	extracellular	83.75	85.56
KRH56323	Soybean	mitochondrion	84.1	85.3
Solyc05g051510.2.1	Tomato	nucleus	83.39	85.2
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.69	83.87
CDY00161	Canola	plastid	82.33	83.81
CDY13700	Canola	plastid	82.33	83.81
CDY20055	Canola	plastid	82.33	83.81
Bra039086.1-P	Field mustard	plastid	82.33	83.81
CDX83674	Canola	plastid	81.98	83.45
Bra025263.1-P	Field mustard	plastid	81.98	83.45
AT3G27280.2	Thale cress	cytosol	81.27	82.44
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.44	80.71
Solyc11g013260.1.1	Tomato	plastid	85.51	80.4
TraesCS2D01G325800.1	Wheat	cytosol	80.21	79.65
TraesCS2A01G337100.1	Wheat	mitochondrion	79.86	79.3
TraesCS2B01G344800.1	Wheat	golgi	79.86	79.3
Zm00001d025619_P001	Maize	mitochondrion	79.15	78.87
EES12301	Sorghum	plastid	78.8	78.52
Os02t0580500-01	Rice	plasma membrane	76.33	76.6
EES07043	Sorghum	mitochondrion	75.27	75.53
TraesCS6B01G228900.1	Wheat	unclear	73.85	74.11
TraesCS6D01G225000.1	Wheat	mitochondrion	73.5	73.76
Zm00001d016979_P001	Maize	mitochondrion	72.79	73.05
TraesCS6B01G281500.1	Wheat	mitochondrion	72.44	72.69
Os04t0462900-02	Rice	plastid	74.91	71.62
TraesCS6A01G198500.1	Wheat	mitochondrion	74.2	66.67
TraesCS6D01G185000.1	Wheat	mitochondrion	73.85	66.35
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	57.95	65.86
HORVU6Hr1G047300.2	Barley	plasma membrane	74.2	60.69
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	50.88	47.06
VIT_19s0085g00730.t01	Wine grape	golgi, vacuole	46.29	38.53
VIT_15s0048g02350.t01	Wine grape	cytosol	45.94	35.81
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	6.01	23.94

Protein Annotations

EntrezGene:100247395	wikigene:100247395	MapMan:19.4.5.8.1.2.2	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ProteinID:CCB62236
ProteinID:CCB62236.1	ncoils:Coil	UniProt:F6I5L8	EMBL:FN596749	GO:GO:0005575	GO:GO:0016020
EntrezGene:LOC100247395	wikigene:LOC100247395	PFAM:PF01145	PRINTS:PR00679	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9
InterPro:Prohibitin	SMART:SM00244	SUPFAM:SSF117892	SignalP:SignalP-noTM	TIGR:TC59299	TIGR:TC63654
UniParc:UPI00015C98AF	ArrayExpress:VIT_14s0171g00430	EnsemblPlantsGene:VIT_14s0171g00430	EnsemblPlants:VIT_14s0171g00430.t01	unigene:Vvi.11208	RefSeq:XP_002265881
RefSeq:XP_002265881.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:+:26235694..26238650

Molecular Weight (calculated)

30726.9 Da

IEP (calculated)

9.290

GRAVY (calculated)

-0.010

Length

283 amino acids

Sequence
(BLAST)

001: MGSSQAAVSF LTNLARAAFG LGAAASVLNA SLYTVDGGQR AVLFDRFRGV IDDTIGEGTH FLVPWLQKPY IFDIRTRPHT FSSVSGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFKTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTDRPH VSALVRDSLI RRAKDFNIVL DDVAITHLSY GAEFSKAVEQ KQVAQQEAER
201: SKFVVAKAEQ ERRAAIIRAE GESESAKLIS DATAAAGMGL IELRRIEASR EIAATLAKTP NVAYLPGGNN MLLGLNPTIA GGR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.