Factsheet for PGSC0003DMT400043286

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 1
cytosol 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035734
PGSC0003DMT400056251

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	PGSC0003DMT400035734	AT4G28510.1	12837548
AT5G40770.1	PGSC0003DMT400056251	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051510.2.1	Tomato	nucleus	96.04	96.39
PGSC0003DMT400041811	Potato	plastid	89.21	88.89
VIT_14s0171g00430.t01	Wine grape	plastid	86.33	84.81
PGSC0003DMT400074656	Potato	plastid	82.73	83.33
KRH56323	Soybean	mitochondrion	82.37	82.08
AT5G40770.1	Thale cress	extracellular, plastid	80.94	81.23
Bra025548.1-P	Field mustard	cytosol	80.94	81.23
CDY11712	Canola	cytosol	80.94	81.23
CDY42555	Canola	cytosol	80.94	81.23
CDY36378	Canola	cytosol	80.94	81.23
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.3	81.0
CDX83674	Canola	plastid	80.58	80.58
CDX67477	Canola	extracellular	80.22	80.51
CDY13700	Canola	plastid	80.22	80.22
Bra028475.1-P	Field mustard	extracellular	79.86	80.14
CDY20055	Canola	plastid	79.86	79.86
CDY00161	Canola	plastid	79.86	79.86
Bra039086.1-P	Field mustard	plastid	79.86	79.86
Bra025263.1-P	Field mustard	plastid	79.86	79.86
KRH44804	Soybean	mitochondrion	80.22	79.64
AT3G27280.2	Thale cress	cytosol	79.86	79.57
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	69.06	75.59
Zm00001d025619_P001	Maize	mitochondrion	75.18	73.59
Os02t0580500-01	Rice	plasma membrane	74.46	73.4
EES12301	Sorghum	plastid	74.82	73.24
TraesCS2D01G325800.1	Wheat	cytosol	74.82	72.98
EES07043	Sorghum	mitochondrion	73.74	72.69
TraesCS2A01G337100.1	Wheat	mitochondrion	74.46	72.63
TraesCS2B01G344800.1	Wheat	golgi	74.46	72.63
TraesCS6B01G228900.1	Wheat	unclear	73.38	72.34
TraesCS6D01G225000.1	Wheat	mitochondrion	73.02	71.99
Zm00001d016979_P001	Maize	mitochondrion	72.66	71.63
TraesCS6B01G281500.1	Wheat	mitochondrion	72.66	71.63
Os04t0462900-02	Rice	plastid	71.22	66.89
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	59.71	66.67
TraesCS6A01G198500.1	Wheat	mitochondrion	73.74	65.08
TraesCS6D01G185000.1	Wheat	mitochondrion	73.38	64.76
HORVU6Hr1G047300.2	Barley	plasma membrane	73.38	58.96
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	47.48	43.14
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	44.96	42.81
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	43.17	41.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400043286	EnsemblPlantsGene:PGSC0003DMG400016803	EntrezGene:102594437	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9	PFAM:PF01145	PGSC:PGSC0003DMG400016803
PRINTS:PR00679	RefSeq:XP_006366224.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix
UniParc:UPI00029614F0	UniProt:M1BED7	MapMan:19.4.5.8.1.2.2	:	:	:

Description

PHB1 [Source:PGSC_GENE;Acc:PGSC0003DMG400016803]

Coordinates

chr5:-:46362664..46364311

Molecular Weight (calculated)

30478.8 Da

IEP (calculated)

9.556

GRAVY (calculated)

-0.070

Length

278 amino acids

Sequence
(BLAST)

001: MGSNQAALSF LKYLAIGAAG IGAGAAALNS SLYTVDGGQR AVLFDRFKGI IDDVVGEGTH FLVPWVQKPF IFDIRTKPHT FSSFSGTKDL QMVHLTLRVL
101: SRPEVSRLPK IFKTLGLEYD EKVLPSIGNE VLKSVVAQFN ADQLLTERPQ VSALVRESLI RRAKDFDIEL DDVAITHLSY GAEFSKAVEK KQVAQQEAER
201: SKFVVMKAEQ ERRAAIIRAE GESESAKLIS DATAAAGMGL IELRRIEASR EIASTLAKTP NVSYLPKQNM LLGLNATR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.