Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
12913143
|
plasma membrane:
27800704
plasma membrane: 28056797 |
gfp PMID:
12913143
doi
Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0101, Japan.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0813200-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40770.1 | Os03t0813200-00 | AT4G28510.1 | 12837548 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07043 | Sorghum | mitochondrion | 87.94 | 87.94 |
| Zm00001d016979_P001 | Maize | mitochondrion | 86.52 | 86.52 |
| TraesCS6B01G228900.1 | Wheat | unclear | 85.46 | 85.46 |
| TraesCS6D01G225000.1 | Wheat | mitochondrion | 85.11 | 85.11 |
| TraesCS6B01G281500.1 | Wheat | mitochondrion | 84.75 | 84.75 |
| TraesCS6A01G198500.1 | Wheat | mitochondrion | 85.46 | 76.51 |
| VIT_14s0171g00430.t01 | Wine grape | plastid | 76.6 | 76.33 |
| TraesCS6D01G185000.1 | Wheat | mitochondrion | 85.11 | 76.19 |
| PGSC0003DMT400041811 | Potato | plastid | 75.18 | 75.99 |
| Solyc11g010190.1.1 | Tomato | nucleus | 75.18 | 75.99 |
| GSMUA_Achr3P20260_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 68.09 | 75.59 |
| Os04t0462900-02 | Rice | plastid | 78.72 | 75.0 |
| CDY11712 | Canola | cytosol | 73.4 | 74.73 |
| CDY36378 | Canola | cytosol | 73.4 | 74.73 |
| CDY42555 | Canola | cytosol | 73.4 | 74.73 |
| CDX67477 | Canola | extracellular | 73.4 | 74.73 |
| Bra028475.1-P | Field mustard | extracellular | 73.4 | 74.73 |
| Solyc05g051510.2.1 | Tomato | nucleus | 73.4 | 74.73 |
| Bra025548.1-P | Field mustard | cytosol | 73.4 | 74.73 |
| PGSC0003DMT400074656 | Potato | plastid | 73.05 | 74.64 |
| KRH56323 | Soybean | mitochondrion | 73.76 | 74.55 |
| PGSC0003DMT400043286 | Potato | extracellular, plasma membrane | 73.4 | 74.46 |
| AT5G40770.1 | Thale cress | extracellular, plastid | 73.05 | 74.37 |
| KRH44804 | Soybean | mitochondrion | 73.76 | 74.29 |
| KRH62783 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 73.4 | 74.19 |
| CDY13700 | Canola | plastid | 73.05 | 74.1 |
| Bra025263.1-P | Field mustard | plastid | 72.69 | 73.74 |
| Bra039086.1-P | Field mustard | plastid | 72.69 | 73.74 |
| CDY20055 | Canola | plastid | 72.69 | 73.74 |
| CDY00161 | Canola | plastid | 72.69 | 73.74 |
| CDX83674 | Canola | plastid | 72.69 | 73.74 |
| AT3G27280.2 | Thale cress | cytosol | 71.99 | 72.76 |
| HORVU6Hr1G047300.2 | Barley | plasma membrane | 85.46 | 69.65 |
| Solyc11g013260.1.1 | Tomato | plastid | 73.05 | 68.44 |
| AT5G14300.1 | Thale cress | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 56.03 | 63.45 |
| GSMUA_Achr7P18670_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 48.23 | 44.44 |
| Os03t0813200-00 | Rice | cytosol, mitochondrion, plasma membrane | 18.09 | 43.22 |
| Os03t0841700-02 | Rice | mitochondrion | 43.97 | 42.76 |
| Os07t0262200-02 | Rice | mitochondrion, plasma membrane, plastid | 41.49 | 40.48 |
| Os03t0814600-00 | Rice | cytosol | 34.04 | 22.27 |
Protein Annotations
| MapMan:19.4.5.8.1.2.2 | EntrezGene:4329777 | ProteinID:BAD27627.1 | ProteinID:BAD29580.1 | ProteinID:BAF09150.1 | ProteinID:BAS79415.1 |
| InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf | ncoils:Coil | ProteinID:EAZ23571.1 | GO:GO:0005575 | GO:GO:0016020 |
| EnsemblPlantsGene:Os02g0580500 | EnsemblPlants:Os02t0580500-01 | PFAM:PF01145 | PRINTS:PR00679 | PANTHER:PTHR23222 | PANTHER:PTHR23222:SF3 |
| InterPro:Prohibitin | UniProt:Q6EP40 | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI00003CE47B | RefSeq:XP_015623678.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Prohibitin. (Os02t0580500-01)
Coordinates
chr2:-:22347066..22348185
Molecular Weight (calculated)
30253.1 Da
IEP (calculated)
6.158
GRAVY (calculated)
-0.006
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGQAAAS LLTKLAQAAA GLGIAASAAS TALYTVDGGQ RAVIFDRFRG VLPETSSEGT HFIVPWLQKP FIFDIRTRPH SFSSTSGTKD LQMVSLTLRV
101: LARPDIDRLP DIFTSLGLEY DEKVLPSIGN EVLKAVVAQF NADQLLTERP HVSALVRDSL IRRAAEFNIV LDDVAITHLA YGPEFSQAVE KKQVAQQEAE
201: RSRFLVARAE QERRAAIVRA EGESEAARLI SEATAAAGTG LIELRRIEAA KEIAGELARS PNVSYIPAGD SSQMLLGLSG AR
101: LARPDIDRLP DIFTSLGLEY DEKVLPSIGN EVLKAVVAQF NADQLLTERP HVSALVRDSL IRRAAEFNIV LDDVAITHLA YGPEFSQAVE KKQVAQQEAE
201: RSRFLVARAE QERRAAIVRA EGESEAARLI SEATAAAGTG LIELRRIEAA KEIAGELARS PNVSYIPAGD SSQMLLGLSG AR
001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR
Arabidopsis Description
PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]
SUBAcon: [plastid,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.