Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • cytosol 1
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc10g008140.2.1
Solyc12g005500.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G40770.1 Solyc10g008140.2.1 AT4G28510.1 12837548
AT5G40770.1 Solyc12g005500.1.1 AT4G28510.1 12837548
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400074656 Potato plastid 90.37 98.55
Solyc11g010190.1.1 Tomato nucleus 82.06 88.53
VIT_14s0171g00430.t01 Wine grape plastid 80.4 85.51
Bra039086.1-P Field mustard plastid 76.74 83.09
CDY00161 Canola plastid 76.74 83.09
CDY20055 Canola plastid 76.74 83.09
CDY13700 Canola plastid 76.41 82.73
KRH44804 Soybean mitochondrion 76.74 82.5
Bra025263.1-P Field mustard plastid 76.08 82.37
CDX83674 Canola plastid 76.08 82.37
CDY36378 Canola cytosol 75.75 82.31
CDY42555 Canola cytosol 75.75 82.31
CDY11712 Canola cytosol 75.75 82.31
CDX67477 Canola extracellular 75.75 82.31
Bra025548.1-P Field mustard cytosol 75.75 82.31
KRH56323 Soybean mitochondrion 76.08 82.08
Bra028475.1-P Field mustard extracellular 75.42 81.95
KRH62783 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 75.75 81.72
Solyc05g051510.2.1 Tomato nucleus 74.75 81.23
AT5G40770.1 Thale cress extracellular, plastid 74.42 80.87
AT3G27280.2 Thale cress cytosol 73.75 79.57
GSMUA_Achr3P20260_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 64.78 76.77
TraesCS2D01G325800.1 Wheat cytosol 72.09 76.14
TraesCS2B01G344800.1 Wheat golgi 72.09 76.14
TraesCS2A01G337100.1 Wheat mitochondrion 72.09 76.14
Zm00001d025619_P001 Maize mitochondrion 71.43 75.7
EES12301 Sorghum plastid 71.43 75.7
EES07043 Sorghum mitochondrion 68.77 73.4
Os02t0580500-01 Rice plasma membrane 68.44 73.05
TraesCS6B01G228900.1 Wheat unclear 68.44 73.05
TraesCS6D01G225000.1 Wheat mitochondrion 68.11 72.69
TraesCS6B01G281500.1 Wheat mitochondrion 67.77 72.34
Zm00001d016979_P001 Maize mitochondrion 66.11 70.57
Os04t0462900-02 Rice plastid 67.44 68.58
AT5G14300.1 Thale cress endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 55.48 67.07
TraesCS6A01G198500.1 Wheat mitochondrion 68.77 65.71
TraesCS6D01G185000.1 Wheat mitochondrion 68.77 65.71
HORVU6Hr1G047300.2 Barley plasma membrane 68.44 59.54
GSMUA_Achr7P18670_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 46.51 45.75
Solyc12g005500.1.1 Tomato plastid 41.53 44.17
Solyc10g008140.2.1 Tomato plastid 40.53 42.21
Protein Annotations
EnsemblPlants:Solyc11g013260.1.1EnsemblPlantsGene:Solyc11g013260.1GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Band_7
InterPro:Band_7/SPFH_dom_sfInterPro:ProhibitinPANTHER:PTHR23222PANTHER:PTHR23222:SF9PFAM:PF01145PRINTS:PR00679
SEG:segSMART:SM00244SUPFAM:SSF117892TMHMM:TMhelixUniParc:UPI000276A430UniProt:K4D6D0
MapMan:19.4.5.8.1.2.2:::::
Description
No Description!
Coordinates
chr11:+:6170897..6173581
Molecular Weight (calculated)
32947.9 Da
IEP (calculated)
9.554
GRAVY (calculated)
0.059
Length
301 amino acids
Sequence
(BLAST)
001: MGSQAAVSFL TNIARAAFTL GLGGALVNSS LYTVDGGQRA VLFDRFNGVL DKTVGEGTHF LIPWLQKPFI FDIRTRPHVF SSVSGTKDLQ MVNLTLRILS
101: RPEISRLPYI FQNLGTEYDE KVLPSIGNEV LKAVVAQFNA DQLLTDRPQV SALVRESLIK RAKDFNIVLD DVAITHLSYG AEFSKAVEQK QVAQQEAERS
201: KFVVMKAEQE RRAAIIRAEG ESESAKLISD ATAAAGMGLI ELRRIEASRE VAGTLAKTPN VAYLPKQGNM LLGLGGGFFN GVVYFTAILL QWPLLTRPFS
301: G
Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)
001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR
Arabidopsis Description
PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.