Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010364.1-P | |
| Bra011035.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40770.1 | Bra010364.1-P | AT4G28510.1 | 12837548 |
| AT5G40770.1 | Bra011035.1-P | AT4G28510.1 | 12837548 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42555 | Canola | cytosol | 100.0 | 100.0 |
| CDY36378 | Canola | cytosol | 100.0 | 100.0 |
| CDY11712 | Canola | cytosol | 100.0 | 100.0 |
| Bra028475.1-P | Field mustard | extracellular | 98.92 | 98.92 |
| AT5G40770.1 | Thale cress | extracellular, plastid | 96.75 | 96.75 |
| Bra039086.1-P | Field mustard | plastid | 91.34 | 91.01 |
| Bra025263.1-P | Field mustard | plastid | 90.97 | 90.65 |
| PGSC0003DMT400041811 | Potato | plastid | 85.56 | 84.95 |
| VIT_14s0171g00430.t01 | Wine grape | plastid | 86.64 | 84.81 |
| Solyc11g010190.1.1 | Tomato | nucleus | 84.48 | 83.87 |
| KRH44804 | Soybean | mitochondrion | 83.39 | 82.5 |
| KRH56323 | Soybean | mitochondrion | 83.03 | 82.44 |
| PGSC0003DMT400074656 | Potato | plastid | 81.59 | 81.88 |
| KRH62783 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 82.31 | 81.72 |
| PGSC0003DMT400043286 | Potato | extracellular, plasma membrane | 81.23 | 80.94 |
| Solyc05g051510.2.1 | Tomato | nucleus | 79.78 | 79.78 |
| GSMUA_Achr3P20260_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 70.04 | 76.38 |
| Solyc11g013260.1.1 | Tomato | plastid | 82.31 | 75.75 |
| EES12301 | Sorghum | plastid | 77.62 | 75.7 |
| TraesCS2D01G325800.1 | Wheat | cytosol | 77.26 | 75.09 |
| TraesCS2A01G337100.1 | Wheat | mitochondrion | 77.26 | 75.09 |
| Zm00001d025619_P001 | Maize | mitochondrion | 76.9 | 75.0 |
| EES07043 | Sorghum | mitochondrion | 76.17 | 74.82 |
| TraesCS2B01G344800.1 | Wheat | golgi | 76.9 | 74.74 |
| Os02t0580500-01 | Rice | plasma membrane | 74.73 | 73.4 |
| Zm00001d016979_P001 | Maize | mitochondrion | 74.01 | 72.69 |
| TraesCS6B01G228900.1 | Wheat | unclear | 72.2 | 70.92 |
| TraesCS6D01G225000.1 | Wheat | mitochondrion | 71.84 | 70.57 |
| TraesCS6B01G281500.1 | Wheat | mitochondrion | 71.48 | 70.21 |
| Os04t0462900-02 | Rice | plastid | 72.56 | 67.91 |
| TraesCS6A01G198500.1 | Wheat | mitochondrion | 72.56 | 63.81 |
| TraesCS6D01G185000.1 | Wheat | mitochondrion | 72.2 | 63.49 |
| HORVU6Hr1G047300.2 | Barley | plasma membrane | 72.56 | 58.09 |
| GSMUA_Achr7P18670_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 49.1 | 44.44 |
| Bra010364.1-P | Field mustard | cytosol | 37.91 | 43.39 |
| Bra011035.1-P | Field mustard | cytosol, mitochondrion, plastid | 43.68 | 41.72 |
| Bra030546.1-P | Field mustard | endoplasmic reticulum | 42.24 | 40.62 |
| Bra032539.1-P | Field mustard | golgi | 42.24 | 40.62 |
| Bra015273.1-P | Field mustard | endoplasmic reticulum | 41.52 | 39.93 |
Protein Annotations
| EnsemblPlants:Bra025548.1 | EnsemblPlants:Bra025548.1-P | EnsemblPlantsGene:Bra025548 | GO:GO:0005575 | GO:GO:0016020 | InterPro:Band_7 |
| InterPro:Band_7/SPFH_dom_sf | InterPro:Prohibitin | PANTHER:PTHR23222 | PANTHER:PTHR23222:SF9 | PFAM:PF01145 | PRINTS:PR00679 |
| SEG:seg | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI0002544EE7 | UniProt:M4E9U2 | MapMan:19.4.5.8.1.2.2 |
Description
AT5G40770 (E=6e-138) ATPHB3 | ATPHB3 (PROHIBITIN 3)
Coordinates
chrA04:-:7944258..7945740
Molecular Weight (calculated)
30482.8 Da
IEP (calculated)
8.796
GRAVY (calculated)
-0.046
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLYTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQKPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVMRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI KRAKDFNIVL DDVAITHLSY GYEFSKAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EVAATLARSP NVAYLPGGQS MLFSLNR
101: SRPEVMRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI KRAKDFNIVL DDVAITHLSY GYEFSKAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EVAATLARSP NVAYLPGGQS MLFSLNR
001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR
Arabidopsis Description
PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]
SUBAcon: [plastid,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.