Factsheet for Bra011035.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025548.1-P
Bra028475.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	Bra025548.1-P	AT5G40770.1	12837548
AT4G28510.1	Bra028475.1-P	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38382	Canola	cytosol, mitochondrion, plastid	100.0	100.0
CDY35195	Canola	cytosol, mitochondrion, plastid	100.0	100.0
Bra010364.1-P	Field mustard	cytosol	78.28	93.8
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	92.76	93.4
CDX97444	Canola	cytosol, mitochondrion, plastid	79.31	88.46
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	86.55	86.85
KRH24002	Soybean	mitochondrion	86.21	86.51
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	85.86	86.16
KRH39037	Soybean	mitochondrion	85.52	85.81
Bra030546.1-P	Field mustard	endoplasmic reticulum	85.17	85.76
Bra032539.1-P	Field mustard	golgi	84.14	84.72
Solyc10g008140.2.1	Tomato	plastid	84.14	84.43
Bra015273.1-P	Field mustard	endoplasmic reticulum	82.41	82.99
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	82.07	81.51
KRH22328	Soybean	cytosol, mitochondrion	73.79	81.37
Solyc12g005500.1.1	Tomato	plastid	74.48	76.33
KRH26997	Soybean	mitochondrion, nucleus	86.55	74.7
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	23.79	58.47
Bra025263.1-P	Field mustard	plastid	43.79	45.68
Bra039086.1-P	Field mustard	plastid	42.41	44.24
Bra025548.1-P	Field mustard	cytosol	41.72	43.68
Bra028475.1-P	Field mustard	extracellular	41.38	43.32
GSMUA_Achr6P12790_001	Banana	golgi	27.24	32.92

Protein Annotations

EnsemblPlants:Bra011035.1	EnsemblPlants:Bra011035.1-P	EnsemblPlantsGene:Bra011035	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PRINTS:PR00679	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix	UniParc:UPI000009E329
UniProt:M4D3I1	MapMan:35.1	:	:	:	:

Description

AT4G28510 (E=2e-134) ATPHB1 | ATPHB1 (PROHIBITIN 1)

Coordinates

chrA01:+:4325212..4326560

Molecular Weight (calculated)

32050.9 Da

IEP (calculated)

9.953

GRAVY (calculated)

-0.140

Length

290 amino acids

Sequence
(BLAST)

001: MNLNNVKVPK VPGGGAVSAL LKIGIIGGLG LYGATHSLYN VDGGHRAIMF NRLVGVKDKV YPEGTHLMVP WFERPVIYDV RARPYLVEST SGSRDLQMVK
101: IGLRVLTRPM ADQLPEIYRT LGENYSERVL PSIIHETLKA VVAQYNASQL ITQREAVSRE IRKILTQRAT NFNIALDDVS ITTLTFGKEF TAAIEAKQVA
201: AQEAERAKFI VEKAEQDKRS AVIRAQGEAK SAQLIGQAIA NNQAFITLRK IEAAREIAQT IAHSANKVYL SSDDLLLNLQ EMNLDVNPKK

Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)

001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN

Arabidopsis Description

PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.