Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
- mitochondrion 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0580500-01 | |
| Os04t0462900-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28510.1 | Os02t0580500-01 | AT5G40770.1 | 12837548 |
| AT4G28510.1 | Os04t0462900-02 | AT5G40770.1 | 12837548 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0841700-02 | Rice | mitochondrion | 66.1 | 26.9 |
| CDY14238 | Canola | cytosol | 55.08 | 26.86 |
| Bra010364.1-P | Field mustard | cytosol | 54.24 | 26.45 |
| Os07t0262200-02 | Rice | mitochondrion, plasma membrane, plastid | 62.71 | 25.61 |
| KRH39037 | Soybean | mitochondrion | 62.71 | 25.61 |
| CDX97444 | Canola | cytosol, mitochondrion, plastid | 55.93 | 25.38 |
| Solyc12g005500.1.1 | Tomato | plastid | 60.17 | 25.09 |
| PGSC0003DMT400056251 | Potato | cytosol, golgi, mitochondrion | 61.02 | 24.91 |
| Solyc10g008140.2.1 | Tomato | plastid | 60.17 | 24.57 |
| KRH29315 | Soybean | endoplasmic reticulum, mitochondrion | 60.17 | 24.57 |
| AT2G20530.2 | Thale cress | cytosol, mitochondrion, plastid | 59.32 | 24.48 |
| PGSC0003DMT400035734 | Potato | cytosol, mitochondrion, plastid | 60.17 | 24.32 |
| AT4G28510.1 | Thale cress | cytosol, mitochondrion, plastid | 59.32 | 24.31 |
| KRH24002 | Soybean | mitochondrion | 59.32 | 24.22 |
| Bra011035.1-P | Field mustard | cytosol, mitochondrion, plastid | 58.47 | 23.79 |
| CDY35195 | Canola | cytosol, mitochondrion, plastid | 58.47 | 23.79 |
| CDY38382 | Canola | cytosol, mitochondrion, plastid | 58.47 | 23.79 |
| AT1G03860.3 | Thale cress | endoplasmic reticulum | 57.63 | 23.78 |
| CDY15478 | Canola | endoplasmic reticulum | 57.63 | 23.61 |
| Bra030546.1-P | Field mustard | endoplasmic reticulum | 57.63 | 23.61 |
| CDY10095 | Canola | golgi | 56.78 | 23.26 |
| Bra032539.1-P | Field mustard | golgi | 56.78 | 23.26 |
| CDY32517 | Canola | golgi | 56.78 | 23.26 |
| Bra015273.1-P | Field mustard | endoplasmic reticulum | 55.08 | 22.57 |
| CDY18191 | Canola | endoplasmic reticulum | 55.08 | 22.57 |
| CDX89860 | Canola | endoplasmic reticulum | 55.08 | 22.57 |
| CDX86666 | Canola | mitochondrion | 57.63 | 22.22 |
| KRH26997 | Soybean | mitochondrion, nucleus | 62.71 | 22.02 |
| KRH22328 | Soybean | cytosol, mitochondrion | 46.61 | 20.91 |
| AT5G44140.1 | Thale cress | golgi | 49.15 | 20.86 |
| Os02t0580500-01 | Rice | plasma membrane | 43.22 | 18.09 |
| GSMUA_Achr6P12790_001 | Banana | golgi | 36.44 | 17.92 |
| Os03t0814600-00 | Rice | cytosol | 60.17 | 16.47 |
| Os04t0462900-02 | Rice | plastid | 33.05 | 13.18 |
Protein Annotations
| EnsemblPlants:Os03t0813200-00 | EnsemblPlantsGene:Os03g0813200 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Prohibitin |
| PANTHER:PTHR23222 | PANTHER:PTHR23222:SF4 | PRINTS:PR00679 | ProteinID:BAS87019.1 | UniParc:UPI000393C21C | UniProt:A0A0P0W5J6 |
| MapMan:35.1 | : | : | : | : | : |
Description
Similar to prohibitin1. (Os03t0813200-00)
Coordinates
chr3:-:34071601..34072369
Molecular Weight (calculated)
13557.8 Da
IEP (calculated)
8.870
GRAVY (calculated)
0.147
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: LLLCLTQAVR LLQLLNPEKS HFSIPWFERL TIFDVCPRPN LVESTSGSRD LQMVRPGLGV LTRPLPTKYR SLGDNFCERV LTSLMHETLK AVVAQYNASQ
101: LIIPREVLSY HIYLFLNM
101: LIIPREVLSY HIYLFLNM
001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN
Arabidopsis Description
PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.