CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15478	Canola	endoplasmic reticulum	97.22	97.22
CDY32517	Canola	golgi	96.18	96.18
CDY10095	Canola	golgi	96.18	96.18
AT1G03860.3	Thale cress	endoplasmic reticulum	94.79	95.45
CDX89860	Canola	endoplasmic reticulum	94.79	94.79
CDX86666	Canola	mitochondrion	96.88	91.18
CDY14238	Canola	cytosol	70.83	84.3
CDY38382	Canola	cytosol, mitochondrion, plastid	84.38	83.79
CDY35195	Canola	cytosol, mitochondrion, plastid	84.38	83.79
KRH39037	Soybean	mitochondrion	81.25	80.97
CDX97444	Canola	cytosol, mitochondrion, plastid	72.57	80.38
Solyc10g008140.2.1	Tomato	plastid	80.56	80.28
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	79.86	79.58
KRH24002	Soybean	mitochondrion	79.86	79.58
KRH22328	Soybean	cytosol, mitochondrion	72.22	79.09
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	78.82	78.55
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	76.74	75.68
Solyc12g005500.1.1	Tomato	plastid	71.88	73.14
KRH26997	Soybean	mitochondrion, nucleus	80.21	68.75
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	22.57	55.08
CDY13700	Canola	plastid	41.67	43.17
CDX83674	Canola	plastid	41.32	42.81
CDY20055	Canola	plastid	40.97	42.45
CDY00161	Canola	plastid	40.97	42.45
CDY42555	Canola	cytosol	39.93	41.52
CDY36378	Canola	cytosol	39.93	41.52
CDY11712	Canola	cytosol	39.93	41.52
CDX67477	Canola	extracellular	39.93	41.52
GSMUA_Achr6P12790_001	Banana	golgi	24.31	29.17

Protein Annotations

EnsemblPlants:CDY18191	EnsemblPlantsGene:GSBRNA2T00002719001	Gene3D:3.30.479.30	GO:A0A078FYT9	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PRINTS:PR00679	ProteinID:CDY18191	ProteinID:CDY18191.1	SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix
UniParc:UPI0004EDC4F9	UniProt:A0A078FYT9	MapMan:35.1	:	:	:

Description

BnaC05g02140DBnaC05g02140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYT9]

Coordinates

chrLK032083:-:231326..233238

Molecular Weight (calculated)

31910.5 Da

IEP (calculated)

9.857

GRAVY (calculated)

-0.155

Length

288 amino acids

Sequence
(BLAST)

001: MSFNKVPNVP GSPALSALLK VSVIGGLGVY AITNSLYNVE GGHRAVMFNR LTGIKEKVYP EGTHFMLPWF ERPIIYDVRA RPYLVESSTG SHDLQTIKIG
101: LRVLTRPMGD RLPHIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAEGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQAM NLEPSSKK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.